| v_1 |
v_1 |
|
met = SAM
0.4 * (0.23 + 0.8 * exp(-0.0026 * SAM)) * vmMATi * (met / kmMATimet) / (1 + met / kmMATimet) * (kiMATiGSSG + 66.71) / (kiMATiGSSG + cGSSG)
|
|
|
| v_10 |
— |
|
ccys = ext
0.35/200*ccys^2
|
|
|
| v_11 |
v_11 |
|
ccys + cglut = cglc
vmgcl * (cglut * ccys - cglc / keqgcl) / (kmgclccys * kmgclglut + kmgclccys * cglut + ccys * kmgclglut * (1 + cGSH / kmgclgsh + cglut / kmgclglut) + cglc / kmgclglc + cGSH / kmgclgsh) * (kagcl + H2O2) / (kagcl + H2O2ss)
|
|
|
| v_12 |
— |
|
cglc + cgly = cGSH
vmgs*(cgly*cglc - cGSH/keqgs)/(kmgscglc*kmgscgly + cglc*kmgscgly + cgly*kmgscglc*(1 + cglc/kmgscglc) + cGSH/kpcgsh)
|
|
|
| v_13 |
— |
|
{2.0}cGSH = cGSSG
vmGPX*((cGSH/(kmGPXgsh + cGSH))^2)* (H2O2/(9*kmGPXH2O2 + H2O2))
|
|
|
| v_14 |
— |
|
cGSSG = {2.0}cGSH
(vmgr*(cGSSG/kmgrGSSG) * (cNADPH/ kmgrNADPH))/(1 + cGSSG/kmgrGSSG + cNADPH/kmgrNADPH + (cGSSG/kmgrGSSG)*(cNADPH/kmgrNADPH))
|
|
|
| v_15 |
— |
|
cGSSG = bGSSG
(vmGSSGl* cGSSG)/(kmGSSGl + cGSSG)*(kaGSSGl + H2O2)/(kaGSSGl + H2O2ss)
|
|
|
| v_16 |
— |
|
cGSSG = bGSSG
(vmGSSGh* cGSSG)/(kmGSSGh + cGSSG)*(kaGSSGh + H2O2)/(kaGSSGh + H2O2ss)
|
|
|
| v_17 |
— |
|
cGSH = ext
0.002*cGSH
|
|
|
| v_18 |
— |
|
cGSH = bGSH
(vmgshoutl*cGSH*cGSH*cGSH)/((kmgshoutl)^3 + cGSH*cGSH*cGSH)
|
|
|
| v_19 |
— |
|
cGSH = bGSH
(vmgshouth*cGSH)/(cGSH + kmgshouth)
|
|
|
| v_2 |
v_2 |
|
met = SAM
vmMATiii * met^1.21 / (kmMATiiimet + met^1.21) * (1 + 7.2 * SAM^2 / (kmMATiiiSAM + SAM^2)) * (kiMATiiiGSSG + 66.71) / (kiMATiiiGSSG + cGSSG)
|
|
|
| v_20 |
— |
|
cGSSG = ext
0.1*cGSSG
|
|
|
| v_21 |
— |
|
bglut = cglut
vmglutin*bglut/(kmbglut + bglut) - kglutin*cglut
|
|
|
| v_22 |
— |
|
bcys = ccys
vmcysin*bcys/(kcysinbcys + bcys)
|
|
|
| v_23 |
— |
|
bser = cser
vmserin*bser/(kbser + bser) - krserin*cser
|
|
|
| v_24 |
— |
|
bgly = cgly
vmglyin*bgly/(kmbgly + bgly) - kcgly*cgly
|
|
|
| v_25 |
— |
|
{3.0}mgly = cgly
vmfgly*mgly/(3*(kgly+mgly)) - vmrgly*cgly/(kgly+cgly)
|
|
|
| v_26 |
— |
|
{3.0}mHCOOH = cHCOOH
khcooh*mHCOOH/3 - khcooh*cHCOOH
|
|
|
| v_27 |
— |
|
{3.0}mser = cser
Vmser*mser/(3*(Kmsermser + mser)) - Vmser*cser/(Kmsermser + cser)
|
|
|
| v_28 |
— |
|
cser + cTHF = cCH2THF + cgly
VmfcSHMT*(cser/KmcSHMTcser)*(cTHF/KmcSHMTcTHF)/(1 + (cser/KmcSHMTcser) + (cTHF/KmcSHMTcTHF) + (cser/KmcSHMTcser)*(cTHF/KmcSHMTcTHF)) - VmrcSHMT*(cgly/KmcSHMTcgly)*(cCH2THF/KmcSHMTcCH2THF)/(1 + (cgly/KmcSHMTcgly) + (cCH2THF/KmcSHMTcCH2THF) + (cgly/KmcSHMTcgly)*(cCH2THF/KmcSHMTcCH2THF))
|
|
|
| v_29 |
— |
|
cDHF = cTHF
VmcDHFR*(cDHF/KmcDHFRcDHF)*(cNADPH/KmcDHFRcNADPH)/(1 + (cDHF/KmcDHFRcDHF) + (cNADPH/KmcDHFRcNADPH) + (cDHF/KmcDHFRcDHF)*(cNADPH/KmcDHFRcNADPH))
|
|
|
| v_3 |
— |
|
SAM = SAH
Vmmeth*SAM/(KmmethSAM*(1 + SAH/KmmethSAH) + SAM)
|
|
|
| v_30 |
— |
|
cTHF + cHCOOH = c10fTHF
VmcFTS*(cTHF/KmcFTScTHF)*(cHCOOH/KmcFTScHCOOH)/(1 + (cTHF/KmcFTScTHF) + (cHCOOH/KmcFTScHCOOH) + (cTHF/KmcFTScTHF)*(cHCOOH/KmcFTScHCOOH))
|
|
|
| v_31 |
— |
|
c10fTHF = cTHF
VmcFTD*(c10fTHF/kmcFTDc10fTHF)/(1 + (c10fTHF/kmcFTDc10fTHF))
|
|
|
| v_32 |
— |
|
c10fTHF = aic + cTHF
VmcPGT*(c10fTHF/KmcPGTc10fTHF)*(GARP/KmcPGTGARP)/(1 + (c10fTHF/KmcPGTc10fTHF) + (GARP/KmcPGTGARP) + (c10fTHF/KmcPGTc10fTHF)*(GARP/KmcPGTGARP))
|
|
|
| v_33 |
— |
|
c10fTHF + aic = cTHF
VmcART*(c10fTHF/KmcARTc10fTHF)*(aic/KmcARTaic)/(1 + (c10fTHF/KmcARTc10fTHF) + (aic/KmcARTaic) + (c10fTHF/KmcARTc10fTHF)*(aic/KmcARTaic))
|
|
|
| v_34 |
— |
|
cTHF = cCH2THF
kfcNE*cTHF*HCHO - krcNE*cCH2THF
|
|
|
| v_35 |
— |
|
cCHTHF = c10fTHF
VmfcMTCH*(cCHTHF/KmcMTCHcCHTHF)/(1 + cCHTHF/KmcMTCHcCHTHF) - VmrcMTCH*(c10fTHF/KmcMTCHc10fTHF)/(1 + c10fTHF/KmcMTCHc10fTHF)
|
|
|
| v_36 |
— |
|
cCH2THF = cDHF
VmcTS*(DUMP/KmcTSDUMP)*(cCH2THF/KmcTScCH2THF)/(1 + (DUMP/KmcTSDUMP) + (cCH2THF/KmcTScCH2THF) + (DUMP/KmcTSDUMP)*(cCH2THF/KmcTScCH2THF))
|
|
|
| v_37 |
— |
|
cCH2THF = cCHTHF
VmfcMTD*(cCH2THF/KmcMTDcCH2THF)/(1 + cCH2THF/KmcMTDcCH2THF) - VmrcMTD*(cCHTHF/KmcMTDcCHTHF)/(1 + cCHTHF/KmcMTDcCHTHF)
|
|
|
| v_38 |
v_38 |
|
cCH2THF = c5mTHF
VmcMTHFR * cCH2THF / KmcMTHFRcCH2THF * (cNADPH / KmcMTHFRcNADPH) / (1 + cCH2THF / KmcMTHFRcCH2THF + cNADPH / KmcMTHFRcNADPH + cCH2THF / KmcMTHFRcCH2THF * (cNADPH / KmcMTHFRcNADPH)) * 63.72 / (10 + piecewise(0, lt(SAM, SAH), SAM - SAH))
|
|
|
| v_39 |
— |
|
mTHF + mser = mgly + mCH2THF
VmfmSHMT*(mser/KmmSHMTmser)*(mTHF/KmmSHMTmTHF)/(1 + (mser/KmmSHMTmser) + (mTHF/KmmSHMTmTHF) + (mser/KmmSHMTmser)*(mTHF/KmmSHMTmTHF)) - VmrmSHMT*(mgly/KmmSHMTmgly)*(mCH2THF/KmmSHMTmCH2THF)/(1 + (mgly/KmmSHMTmgly) + (mCH2THF/KmmSHMTmCH2THF) + (mgly/KmmSHMTmgly)*(mCH2THF/KmmSHMTmCH2THF))
|
|
|
| v_4 |
v_4 |
|
SAM + cgly = SAH + msarc
260 * SAM / ((63 + SAM) * (1 + SAH / kmGNMTSAH)) * cgly / (kmGNMTcgly + cgly) * (4.8 / (0.35 + c5mTHF))
|
|
|
| v_40 |
— |
|
mTHF + mHCOOH = m10fTHF
VmfmFTS*(mTHF/KmmFTSmTHF)*(mHCOOH/KmmFTSmHCOOH)/(1 + (mTHF/KmmFTSmTHF) + (mHCOOH/KmmFTSmHCOOH) + (mTHF/KmmFTSmTHF)*(mHCOOH/KmmFTSmHCOOH)) - VmrmFTS*(m10fTHF/KmmFTSm10fTHF)/(1+(m10fTHF/KmmFTSm10fTHF))
|
|
|
| v_41 |
— |
|
m10fTHF = mTHF
VmmFTD*(m10fTHF/kmmFTDm10fTHF)/(1 + (m10fTHF/kmmFTDm10fTHF))
|
|
|
| v_42 |
— |
|
mCHTHF = m10fTHF
VmfmMTCH*(mCHTHF/KmmMTCHmCHTHF)/(1 + mCHTHF/KmmMTCHmCHTHF) - VmrmMTCH*(m10fTHF/KmmMTCHm10fTHF)/(1 + m10fTHF/KmmMTCHm10fTHF)
|
|
|
| v_43 |
— |
|
mCH2THF = mCHTHF
VmfmMTD*(mCH2THF/KmmMTDmCH2THF)/(1 + mCH2THF/KmmMTDmCH2THF) - VmrmMTD*(mCHTHF/KmmMTDmCHTHF)/(1 + mCHTHF/KmmMTDmCHTHF)
|
|
|
| v_44 |
— |
|
mTHF + mgly = mCH2THF
VmmGDC*(mgly/KmmGDCmgly)*(mTHF/KmmGDCmTHF)/(1 + (mgly/KmmGDCmgly) + (mTHF/KmmGDCmTHF) + (mgly/KmmGDCmgly)*(mTHF/KmmGDCmTHF))
|
|
|
| v_45 |
— |
|
mTHF + msarc = mgly + mCH2THF
VmmSDH*(msarc/KmmSDHsarc)*(mTHF/KmmSDHmTHF)/(1 + (msarc/KmmSDHsarc) + (mTHF/KmmSDHmTHF) + (msarc/KmmSDHsarc)*(mTHF/KmmSDHmTHF))
|
|
|
| v_46 |
— |
|
mTHF + dmg = msarc + mCH2THF
VmmDMGD*(dmg/KmmDMGDdmg)*(mTHF/KmmDMGDmTHF)/(1 + (dmg/KmmDMGDdmg) + (mTHF/KmmDMGDmTHF) + (dmg/KmmDMGDdmg)*(mTHF/KmmDMGDmTHF))
|
|
|
| v_47 |
— |
|
mTHF = mCH2THF
kfmNE*mTHF*HCHO - krmNE*mCH2THF
|
|
|
| v_48 |
— |
|
bmet = met
vmmetin*bmet/(kmmetinoutmethionine + bmet) - kmetincmethionine*met
|
|
|
| v_49 |
v_49 |
|
ext = bcys
vocysb + k0 * bGSSG * bGSH
|
|
|
| v_5 |
— |
|
SAH = hcy
Vmfah*(SAH/KmahSAH)/(1 + (SAH/KmahSAH)) - (1)*6*Vmrah*(hcy/Kmahhcy)/(1 + (hcy/Kmahhcy))
|
|
|
| v_50 |
v_50 |
|
ext = bglut
voglub + k0 * bGSSG * bGSH
|
|
|
| v_51 |
v_51 |
|
ext = bgly
voglyb + k0 * bGSSG * bGSH
|
|
|
| v_52 |
— |
|
cser = ext
1.2*cser
|
|
|
| v_53 |
— |
|
cglut = ext
0.07*cglut
|
|
|
| v_54 |
— |
|
bGSH = bgly + bcys + bglut
90*bGSH
|
|
|
| v_55 |
— |
|
bGSSG = {2.0}bgly + {2.0}bcys + {2.0}bglut
135/2*bGSSG
|
|
|
| v_56 |
— |
|
bgly = ext
0.1*bgly
|
|
|
| v_57 |
— |
|
bcys = ext
0.35*bcys
|
|
|
| v_58 |
— |
|
bglut = ext
0.1*bglut
|
|
|
| v_59 |
— |
|
bGSH = ext
0.7*bGSH
|
|
|
| v_6 |
v_6 |
|
hcy = met + dmg
Vmbhmt * (hcy / Kmbhmthcy) / (1 + hcy / Kmbhmthcy) * BET / (Kmbhmtbet + BET) * exp(-0.0021 * (SAH + SAM)) * exp(0.0021 * 102.59) * (H2O2ss + KibhmtH2O2) / (H2O2 + KibhmtH2O2)
|
|
|
| v_60 |
— |
|
bGSSG = ext
7.5*bGSSG
|
|
|
| v_7 |
— |
|
hcy + c5mTHF = met + cTHF
vmMS*(hcy/kmMShcy)/(1 + (hcy/kmMShcy))*(c5mTHF/kmMSmTH4)/(1 + (c5mTHF/kmMSmTH4))*(kiMSH2O2 + H2O2ss)/(kiMSH2O2 + H2O2)
|
|
|
| v_8 |
v_8 |
|
hcy + cser = cyt
Vmcbs * cser / (Kmcbsserine + cser) * hcy / Kmcbshcy / (1 + hcy / Kmcbshcy) * 1.2 / ((30 / (SAM + SAH))^2 + 1) * (1.2 / ((30 / 102.59)^2 + 1))^-1 * (kaH2O2 + H2O2) / (kaH2O2 + H2O2ss)
|
|
|
| v_9 |
— |
|
cyt = ccys
vmctgl*(cyt/kmctglcyt)/(1 + (cyt/kmctglcyt))
|
|
|