nakakuki1
The SBML for this model was obtained from the BioModels database (BioModels ID: BIOMD0000000169) Biomodels notes: Reproduction of fig 1 F-I of the original publication. Integrations were performed using SBML ODESolver. The concentrations were rescaled to the highest level of HRG induced activation. Fig 1I differs slightly, either due to a different amount of plotting points or differences in the normalization. JWS Online curation: This model was curated by reproducing the figures as described in the BioModels Notes. The figures were not normalised.
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Unit definitions have no effect on the numerical analysis of the model. It remains the responsibility of the modeler to ensure the internal numerical consistency of the model. If units are provided, however, the consistency of the model units will be checked.
| Name | Definition | |
|---|---|---|
| — | 1e-09 mole | |
| — | 1e-12 litre |
| Id | Name | Spatial dimensions | Size | |
|---|---|---|---|---|
| cytoplasm | cytoplasm | 3.0 | 940.0 | |
| default | default | 3.0 | 1.0 | |
| nucleus | nucleus | 3.0 | 220.0 |
| Id | Name | Initial quantity | Compartment | Fixed | |
|---|---|---|---|---|---|
| A1 | A1 | 182.3524 | cytoplasm (cytoplasm) | ✘ | |
| A1_2 | A1_2 | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| A2 | A2 | 25.38702 | cytoplasm (cytoplasm) | ✘ | |
| A2_2 | A2_2 | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| A3 | A3 | 13.09262 | cytoplasm (cytoplasm) | ✘ | |
| A3_2 | A3_2 | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| CREB_n | CREB_n | 1000.0 | nucleus (nucleus) | ✘ | |
| DUSP_c | DUSP_c | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| DUSP_n | DUSP_n | 0.0 | nucleus (nucleus) | ✘ | |
| DUSP_n_ERK_n | DUSP_n_ERK_n | 0.0 | nucleus (nucleus) | ✘ | |
| DUSP_n_pERK_n | DUSP_n_pERK_n | 0.0 | nucleus (nucleus) | ✘ | |
| DUSP_n_ppERK_n | DUSP_n_ppERK_n | 0.0 | nucleus (nucleus) | ✘ | |
| DUSPmRNA | DUSPmRNA | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| EGF | EGF | 1.0 | default (default) | ✔ | |
| ERK_c | ERK_c | 570.4179 | cytoplasm (cytoplasm) | ✘ | |
| ERK_n | ERK_n | 1624.9 | nucleus (nucleus) | ✘ | |
| Elk1_n | Elk1_n | 1510.0 | nucleus (nucleus) | ✘ | |
| F | F | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| FOSn | FOSn | 0.0 | nucleus (nucleus) | ✘ | |
| FOSn_2 | FOSn_2 | 0.0 | nucleus (nucleus) | ✘ | |
| FmRNA | FmRNA | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| Fn | Fn | 0.0 | nucleus (nucleus) | ✘ | |
| HRG | HRG | 1.0 | default (default) | ✔ | |
| Kin | Kin | 82.66574 | cytoplasm (cytoplasm) | ✘ | |
| Kin_2 | Kin_2 | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| MEK | MEK | 637.3212 | cytoplasm (cytoplasm) | ✘ | |
| PreDUSPmRNA | PreDUSPmRNA | 0.0 | nucleus (nucleus) | ✘ | |
| PreFOSmRNA | PreFOSmRNA | 0.0 | nucleus (nucleus) | ✘ | |
| PreFmRNA | PreFmRNA | 0.0 | nucleus (nucleus) | ✘ | |
| RSK_c | RSK_c | 353.0 | cytoplasm (cytoplasm) | ✘ | |
| RsD | RsD | 247.4035 | cytoplasm (cytoplasm) | ✘ | |
| RsT | RsT | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| c_FOS_c | c_FOS_c | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| c_FOSmRNA | c_FOSmRNA | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| pCREB_n | pCREB_n | 0.0 | nucleus (nucleus) | ✘ | |
| pDUSP_c | pDUSP_c | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| pDUSP_n | pDUSP_n | 0.0 | nucleus (nucleus) | ✘ | |
| pDUSP_n_ERK_n | pDUSP_n_ERK_n | 0.0 | nucleus (nucleus) | ✘ | |
| pDUSP_n_pERK_n | pDUSP_n_pERK_n | 0.0 | nucleus (nucleus) | ✘ | |
| pDUSP_n_ppERK_n | pDUSP_n_ppERK_n | 0.0 | nucleus (nucleus) | ✘ | |
| pERK_c | pERK_c | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| pERK_n | pERK_n | 0.0 | nucleus (nucleus) | ✘ | |
| pElk1_n | pElk1_n | 0.0 | nucleus (nucleus) | ✘ | |
| pMEK | pMEK | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| pRSK_c | pRSK_c | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| pRSK_n | pRSK_n | 0.0 | nucleus (nucleus) | ✘ | |
| pc_FOS_c | pc_FOS_c | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| ppERK_c | ppERK_c | 0.0 | cytoplasm (cytoplasm) | ✘ | |
| ppERK_n | ppERK_n | 0.0 | nucleus (nucleus) | ✘ |
Initial assignments are expressions that are evaluated at time=0. It is not recommended to create initial assignments for all model entities. Restrict the use of initial assignments to cases where a value is expressed in terms of values or sizes of other model entities. Note that it is not permitted to have both an initial assignment and an assignment rule for a single model entity.
| Definition |
|---|
| Id | Name | Objective coefficient | Reaction Equation and Kinetic Law | Flux bounds | |
|---|---|---|---|---|---|
| re106 | v007 | ERK_c = ERK_n function_4_v007(KexERK, KimERK, Vc, Vn, ERK_c, ERK_n) | |||
| re107 | v008 | pERK_c = pERK_n function_4_v008(KexERKP, KimERKP, Vc, Vn, pERK_c, pERK_n) | |||
| re108 | v009 | ppERK_c = ppERK_n function_4_v009(KexERKPP, KimERKPP, Vc, Vn, ppERK_c, ppERK_n) | |||
| re109 | v010 | ∅ > PreDUSPmRNA nucleus * function_4_v010(K10, V10, n10, ppERK_n) | |||
| re110 | v011 | PreDUSPmRNA > DUSPmRNA function_4_v011(Vn, p11, PreDUSPmRNA) | |||
| re111 | v018 | DUSP_c = DUSP_n function_4_v018(KexDUSP, KimDUSP, Vc, Vn, DUSP_n, DUSP_c) | |||
| re112 | v019 | pDUSP_c = pDUSP_n function_4_v019(KexDUSPP, KimDUSPP, Vc, Vn, pDUSP_c, pDUSP_n) | |||
| re113 | v026 | pRSK_c = pRSK_n function_4_v026(KexRSKP, KimRSKP, Vc, Vn, pRSK_n, pRSK_c) | |||
| re115 | v032 | PreFOSmRNA > c_FOSmRNA function_4_v032(Vn, p32, PreFOSmRNA) | |||
| re116 | v040 | c_FOS_c = FOSn function_4_v040(KexFOS, KimFOS, Vc, Vn, c_FOS_c, FOSn) | |||
| re117 | v041 | pc_FOS_c = FOSn_2 function_4_v041(KexFOSP, KimFOSP, Vc, Vn, pc_FOS_c, FOSn_2) | |||
| re118 | v058 | PreFmRNA > FmRNA function_4_v058(Vn, p58, PreFmRNA) | |||
| re119 | v062 | F = Fn function_4_v062(KexF, KimF, Vc, Vn, F, Fn) | |||
| re85 | v003 | pERK_c > ERK_c cytoplasm * function_4_v003(K3, K4, V3, pERK_c, ppERK_c) | |||
| re86 | v004 | ppERK_c > pERK_c cytoplasm * function_4_v004(K3, K4, V4, pERK_c, ppERK_c) | |||
| re87 | v005 | pERK_n > ERK_n nucleus * function_4_v005(K5, K6, V5, pERK_n, ppERK_n) | |||
| re88 | v006 | ppERK_n > pERK_n nucleus * function_4_v006(K5, K6, V6, pERK_n, ppERK_n) | |||
| re89 | v013 | ∅ > DUSP_c cytoplasm * function_4_v013(p13, DUSPmRNA) | |||
| re90 | v034 | ∅ > c_FOS_c cytoplasm * function_4_v034(p34, c_FOSmRNA) | |||
| re92 | v057 | ∅ > PreFmRNA nucleus * function_4_v057(K57, V57, n57, FOSn_2) | |||
| re94 | v059 | FmRNA > ∅ cytoplasm * p59 * FmRNA | |||
| re95 | v060 | ∅ > F cytoplasm * function_4_v060(p60, FmRNA) | |||
| re96 | v061 | F > ∅ cytoplasm * p61 * F | |||
| re99 | v063 | Fn > ∅ nucleus * function_4_v063(cytoplasm, nucleus, p63, Fn) | |||
| reaction_12 | v020 | DUSP_n > pDUSP_n nucleus * function_4_v020(K20, V20, ppERK_n, DUSP_n) | |||
| reaction_13 | v021 | pDUSP_n > DUSP_n nucleus * function_4_v021(K21, V21, pDUSP_n) | |||
| reaction_14 | v022 | DUSP_n > ∅ nucleus * p22 * DUSP_n | |||
| reaction_15 | v023 | pDUSP_n > ∅ nucleus * p23 * pDUSP_n | |||
| reaction_17 | v012 | DUSPmRNA > ∅ cytoplasm * p12 * DUSPmRNA | |||
| reaction_21 | v052 | ppERK_n + DUSP_n = DUSP_n_ppERK_n nucleus * (p47 * DUSP_n * ppERK_n - m47 * DUSP_n_ppERK_n) | |||
| reaction_22 | v053 | DUSP_n_ppERK_n > pERK_n + DUSP_n nucleus * p48 * DUSP_n_ppERK_n | |||
| reaction_23 | v054 | pERK_n + DUSP_n = DUSP_n_pERK_n nucleus * (p49 * DUSP_n * pERK_n - m49 * DUSP_n_pERK_n) | |||
| reaction_24 | v055 | DUSP_n_pERK_n > ERK_n + DUSP_n nucleus * p50 * DUSP_n_pERK_n | |||
| reaction_25 | v047 | ppERK_n + pDUSP_n = pDUSP_n_ppERK_n nucleus * (p52 * pDUSP_n * ppERK_n - m52 * pDUSP_n_ppERK_n) | |||
| reaction_26 | v048 | pDUSP_n_ppERK_n > pERK_n + pDUSP_n nucleus * p53 * pDUSP_n_ppERK_n | |||
| reaction_27 | v049 | pERK_n + pDUSP_n = pDUSP_n_pERK_n nucleus * (p54 * pDUSP_n * pERK_n - m54 * pDUSP_n_pERK_n) | |||
| reaction_28 | v050 | pDUSP_n_pERK_n > ERK_n + pDUSP_n nucleus * p55 * pDUSP_n_pERK_n | |||
| reaction_29 | v056 | ERK_n + DUSP_n = DUSP_n_ERK_n nucleus * (p51 * DUSP_n * ERK_n - m51 * DUSP_n_ERK_n) | |||
| reaction_30 | v051 | ERK_n + pDUSP_n = pDUSP_n_ERK_n nucleus * (p56 * pDUSP_n * ERK_n - m56 * pDUSP_n_ERK_n) | |||
| reaction_31 | v101 | A1 > A1_2 EGFm * cytoplasm * function_4_v101(K101, V101, A1, EGF) | |||
| reaction_32 | v001 | ERK_c > pERK_c cytoplasm * function_4_v001(Fct, K1, K2, V1, ERK_c, pERK_c, pMEK) | |||
| reaction_33 | v014 | DUSP_c > pDUSP_c cytoplasm * function_4_v014(K14, V14, ppERK_c, DUSP_c) | |||
| reaction_34 | v015 | pDUSP_c > DUSP_c cytoplasm * function_4_v015(K15, V15, pDUSP_c) | |||
| reaction_35 | v016 | DUSP_c > ∅ cytoplasm * p16 * DUSP_c | |||
| reaction_36 | v017 | pDUSP_c > ∅ cytoplasm * p17 * pDUSP_c | |||
| reaction_41 | v024 | RSK_c > pRSK_c cytoplasm * function_4_v024(K24, V24, ppERK_c, RSK_c) | |||
| reaction_42 | v025 | pRSK_c > RSK_c cytoplasm * function_4_v025(K25, V25, pRSK_c) | |||
| reaction_45 | v027 | CREB_n > pCREB_n nucleus * function_4_v027(K27, V27, CREB_n, pRSK_n) | |||
| reaction_46 | v028 | pCREB_n > CREB_n nucleus * function_4_v028(K28, V28, pCREB_n) | |||
| reaction_47 | v031 | ∅ > PreFOSmRNA nucleus * function_4_v031(K31, KF31, V31, n31, nF31, Fn, pCREB_n, pElk1_n) | |||
| reaction_50 | v033 | c_FOSmRNA > ∅ cytoplasm * p33 * c_FOSmRNA | |||
| reaction_52 | v042 | FOSn > FOSn_2 nucleus * function_4_v042(K42, V42, ppERK_n, FOSn) | |||
| reaction_53 | v043 | FOSn > FOSn_2 nucleus * function_4_v043(K43, V43, FOSn, pRSK_n) | |||
| reaction_54 | v044 | FOSn_2 > FOSn nucleus * function_4_v044(K44, V44, FOSn_2) | |||
| reaction_55 | v045 | FOSn > ∅ nucleus * p45 * FOSn | |||
| reaction_56 | v046 | FOSn_2 > ∅ nucleus * p46 * FOSn_2 | |||
| reaction_57 | v029 | Elk1_n > pElk1_n nucleus * function_4_v029(K29, V29, ppERK_n, Elk1_n) | |||
| reaction_58 | v030 | pElk1_n > Elk1_n nucleus * function_4_v030(K30, V30, pElk1_n) | |||
| reaction_59 | v035 | c_FOS_c > pc_FOS_c cytoplasm * function_4_v035(K35, V35, c_FOS_c, ppERK_c) | |||
| reaction_6 | v002 | pERK_c > ppERK_c cytoplasm * function_4_v002(Fct, K1, K2, V2, ERK_c, pERK_c, pMEK) | |||
| reaction_60 | v037 | pc_FOS_c > c_FOS_c cytoplasm * function_4_v037(K37, V37, pc_FOS_c) | |||
| reaction_61 | v038 | c_FOS_c > ∅ cytoplasm * p38 * c_FOS_c | |||
| reaction_62 | v039 | pc_FOS_c > ∅ cytoplasm * p39 * pc_FOS_c | |||
| reaction_67 | v036 | c_FOS_c > pc_FOS_c cytoplasm * function_4_v036(K36, V36, c_FOS_c, pRSK_c) | |||
| reaction_68 | v102 | A1_2 > A1 cytoplasm * function_4_v102(K102, V102, A1_2) | |||
| reaction_69 | v103 | A2 > A2_2 HRGm * cytoplasm * function_4_v103(K103, V103, A2, HRG) | |||
| reaction_70 | v104 | A2_2 > A2 cytoplasm * function_4_v104(K104, V104, A2_2) | |||
| reaction_71 | v105 | RsD > RsT EGFm * cytoplasm * function_4_v105(K105, V105, EGF, RsD) | |||
| reaction_72 | v106 | RsD > RsT HRGm * cytoplasm * function_4_v106(K106, V106, HRG, RsD) | |||
| reaction_73 | v107 | RsT > RsD cytoplasm * function_4_v107(K107, V107, A1_2, RsT) | |||
| reaction_74 | v108 | RsT > RsD cytoplasm * function_4_v108(K108, V108, A2_2, RsT) | |||
| reaction_75 | v109 | A3 > A3_2 HRGm * cytoplasm * function_4_v109(K109, V109, HRG, A3) | |||
| reaction_76 | v110 | A3_2 > A3 cytoplasm * function_4_v110(K110, V110, A3_2) | |||
| reaction_77 | v111 | Kin > Kin_2 HRGm * cytoplasm * function_4_v111(K111, V111, HRG, Kin) | |||
| reaction_78 | v112 | Kin_2 > Kin cytoplasm * function_4_v112(K112, V112, A3_2, Kin_2) | |||
| reaction_79 | v113 | MEK > pMEK cytoplasm * function_4_v113(K113, V113, RsT, MEK) | |||
| reaction_80 | v114 | MEK > pMEK cytoplasm * function_4_v114(K114, V114, Kin_2, MEK) | |||
| reaction_81 | v115 | pMEK > MEK cytoplasm * function_4_v115(K115, V115, pMEK) |
| Id | Value | |
|---|---|---|
| EGFm | 1.0 | |
| Fct | 0.7485 | |
| HRGm | 1.0 | |
| K1 | 307.041525298866 | |
| K10 | 169.0473748 | |
| K101 | 3475.168 | |
| K102 | 237.2001 | |
| K103 | 1334.132 | |
| K104 | 4046.71 | |
| K105 | 1.027895 | |
| K106 | 606.871 | |
| K107 | 424.6884 | |
| K108 | 11.5048 | |
| K109 | 7424.816 | |
| K110 | 425.5268 | |
| K111 | 858.3423 | |
| K112 | 4665.217 | |
| K113 | 20.50809 | |
| K114 | 7.774197 | |
| K115 | 2122.045 | |
| K14 | 34180.48 | |
| K15 | 0.001172165 | |
| K2 | 350.0 | |
| K20 | 735598.6967 | |
| K21 | 387.8377182 | |
| K24 | 29516.06587 | |
| K25 | 0.913939859 | |
| K27 | 441.5834425 | |
| K28 | 14.99180922 | |
| K29 | 21312.69109 | |
| K3 | 160.0 | |
| K30 | 15.04396629 | |
| K31 | 185.9760682 | |
| K35 | 8562.744184 | |
| K36 | 528.552427 | |
| K37 | 0.070379236 | |
| K4 | 60.0 | |
| K42 | 3992.061328 | |
| K43 | 1157.116021 | |
| K44 | 0.051168202 | |
| K5 | 29.94073716 | |
| K57 | 0.637490056 | |
| K6 | 29.9407371620698 | |
| KF31 | 0.013844393 | |
| KexDUSP | 0.070467899 | |
| KexDUSPP | 0.070467899 | |
| KexERK | 0.018 | |
| KexERKP | 0.018 | |
| KexERKPP | 0.013 | |
| KexF | 0.396950616 | |
| KexFOS | 0.133249762 | |
| KexFOSP | 0.133249762 | |
| KexRSKP | 0.129803956 | |
| KimDUSP | 0.024269764 | |
| KimDUSPP | 0.024269764 | |
| KimERK | 0.012 | |
| KimERKP | 0.012 | |
| KimERKPP | 0.011 | |
| KimF | 0.019898797 | |
| KimFOS | 0.54528521 | |
| KimFOSP | 0.54528521 | |
| KimRSKP | 0.025925065 | |
| V1 | 0.342848369838443 | |
| V10 | 29.24109258 | |
| V101 | 0.01807448 | |
| V102 | 0.09858154 | |
| V103 | 0.3573399 | |
| V104 | 4.635749 | |
| V105 | 0.05393704 | |
| V106 | 0.109304 | |
| V107 | 5.291093 | |
| V108 | 0.03436149 | |
| V109 | 0.1374307 | |
| V110 | 0.08258693 | |
| V111 | 0.02487469 | |
| V112 | 0.8850982 | |
| V113 | 0.05377297 | |
| V114 | 0.03957055 | |
| V115 | 13.74244 | |
| V14 | 5.636949216 | |
| V15 | 2.992346912 | |
| V2 | 0.22 | |
| V20 | 0.157678678 | |
| V21 | 0.005648117 | |
| V24 | 0.550346114 | |
| V25 | 10.09063736 | |
| V27 | 19.23118154 | |
| V28 | 6.574759504 | |
| V29 | 0.518529841 | |
| V3 | 0.72 | |
| V30 | 13.79479021 | |
| V31 | 0.655214248 | |
| V35 | 8.907637012 | |
| V36 | 0.000597315 | |
| V37 | 1.745848179 | |
| V4 | 0.648 | |
| V42 | 0.909968714 | |
| V43 | 0.076717457 | |
| V44 | 0.078344305 | |
| V5 | 19.49872346 | |
| V57 | 1.026834758 | |
| V6 | 19.4987234631759 | |
| Vc | 940.0 | |
| Vn | 220.0 | |
| m47 | 15.80783969 | |
| m49 | 2.335459127 | |
| m51 | 9.544308421 | |
| m52 | 15.80783969 | |
| m54 | 2.335459127 | |
| m56 | 9.544308421 | |
| n10 | 3.970849295 | |
| n31 | 1.988003164 | |
| n57 | 3.584464176 | |
| nF31 | 2.800340453 | |
| p11 | 0.000126129 | |
| p12 | 0.007875765 | |
| p13 | 0.001245747 | |
| p16 | 0.000257 | |
| p17 | 0.0000481 | |
| p22 | 0.000257 | |
| p23 | 0.0000481 | |
| p32 | 0.003284434 | |
| p33 | 0.000601234209304622 | |
| p34 | 0.0000764816282169636 | |
| p38 | 0.000257 | |
| p39 | 0.0000481 | |
| p45 | 0.000257 | |
| p46 | 0.0000481 | |
| p47 | 0.001670815 | |
| p48 | 0.686020478 | |
| p49 | 0.314470502 | |
| p50 | 26.59483436 | |
| p51 | 0.01646825 | |
| p52 | 0.001670815 | |
| p53 | 0.686020478 | |
| p54 | 0.314470502 | |
| p55 | 26.59483436 | |
| p56 | 0.01646825 | |
| p58 | 0.000270488 | |
| p59 | 0.001443889 | |
| p60 | 0.002448164 | |
| p61 | 0.0000349860901414122 | |
| p63 | 0.0000413466150826031 |
| Id | Value | Reaction |
|---|
| Definition |
|---|
| Definition |
|---|
| Definition |
|---|
| Definition | |
|---|---|
| function_4_v062(KexF, KimF, Vc, Vn, F, Fn) = KimF * Vc * F - KexF * Vn * Fn | |
| function_4_v109(K109, V109, HRG, A3) = V109 * HRG * A3 / (K109 + A3) | |
| function_4_v043(K43, V43, FOSn, pRSK_n) = V43 * pRSK_n * FOSn / (K43 + FOSn) | |
| function_4_v104(K104, V104, A2_2) = V104 * A2_2 / (K104 + A2_2) | |
| function_4_v115(K115, V115, MEKc) = V115 * MEKc / (K115 + MEKc) | |
| function_4_v035(K35, V35, c_FOS_c, ppERK_c) = V35 * ppERK_c * c_FOS_c / (K35 + c_FOS_c) | |
| function_4_v041(KexFOSP, KimFOSP, Vc, Vn, pc_FOS_c, FOSn_2) = KimFOSP * Vc * pc_FOS_c - KexFOSP * Vn * FOSn_2 | |
| function_4_v008(KexERKP, KimERKP, Vc, Vn, pERK_c, pERK_n) = KimERKP * Vc * pERK_c - KexERKP * Vn * pERK_n | |
| function_4_v015(K15, V15, pDUSP_c) = V15 * pDUSP_c / (K15 + pDUSP_c) | |
| function_4_v018(KexDUSP, KimDUSP, Vc, Vn, DUSP_n, DUSP_c) = KimDUSP * Vc * DUSP_c - KexDUSP * Vn * DUSP_n | |
| function_4_v003(K3, K4, V3, pERK_c, ppERK_c) = V3 * pERK_c / (K3 * (1 + ppERK_c / K4) + pERK_c) | |
| function_4_v005(K5, K6, V5, pERK_n, ppERK_n) = V5 * pERK_n / (K5 * (1 + ppERK_n / K6) + pERK_n) | |
| function_4_v006(K5, K6, V6, pERK_n, ppERK_n) = V6 * ppERK_n / (K6 * (1 + pERK_n / K5) + ppERK_n) | |
| function_4_v020(K20, V20, ppERK_n, DUSP_n) = V20 * ppERK_n * DUSP_n / (K20 + DUSP_n) | |
| function_4_v021(K21, V21, pDUSP_n) = V21 * pDUSP_n / (K21 + pDUSP_n) | |
| function_4_v024(K24, V24, ppERK_c, RSK_c) = V24 * ppERK_c * RSK_c / (K24 + RSK_c) | |
| function_4_v002(Fct, K1, K2, V2, ERK_c, pERK_c, MEKc) = V2 * Fct * MEKc * pERK_c / (K2 * (1 + ERK_c / K1) + pERK_c) | |
| function_4_v036(K36, V36, c_FOS_c, pRSK_c) = V36 * pRSK_c * c_FOS_c / (K36 + c_FOS_c) | |
| function_4_v037(K37, V37, pc_FOS_c) = V37 * pc_FOS_c / (K37 + pc_FOS_c) | |
| function_4_v040(KexFOS, KimFOS, Vc, Vn, c_FOS_c, FOSn) = KimFOS * Vc * c_FOS_c - KexFOS * Vn * FOSn | |
| function_4_v107(K107, V107, A1_2, RsT) = V107 * A1_2 * RsT / (K107 + RsT) | |
| function_4_v014(K14, V14, ppERK_c, DUSP_c) = V14 * ppERK_c * DUSP_c / (K14 + DUSP_c) | |
| function_4_v110(K110, V110, A3_2) = V110 * A3_2 / (K110 + A3_2) | |
| function_4_v114(K114, V114, Kin_2, pMEK_c) = V114 * Kin_2 * pMEK_c / (K114 + pMEK_c) | |
| function_4_v031(K31, KF31, V31, n31, nF31, Fn, pCREB_n, pElk1_n) = V31 * pow(pCREB_n * pElk1_n, n31) / (pow(K31, n31) + pow(pCREB_n * pElk1_n, n31) + pow(Fn / KF31, nF31)) | |
| function_4_v007(KexERK, KimERK, Vc, Vn, ERK_c, ERK_n) = KimERK * Vc * ERK_c - KexERK * Vn * ERK_n | |
| function_4_v004(K3, K4, V4, pERK_c, ppERK_c) = V4 * ppERK_c / (K4 * (1 + pERK_c / K3) + ppERK_c) | |
| function_4_v001(Fct, K1, K2, V1, ERK_c, pERK_c, MEKc) = V1 * Fct * MEKc * ERK_c / (K1 * (1 + pERK_c / K2) + ERK_c) | |
| function_4_v010(K10, V10, n10, ppERK_n) = V10 * pow(ppERK_n, n10) / (pow(K10, n10) + pow(ppERK_n, n10)) | |
| function_4_v113(K113, V113, RsT, pMEK_c) = V113 * RsT * pMEK_c / (K113 + pMEK_c) | |
| function_4_v111(K111, V111, HRG, Kin) = V111 * HRG * Kin / (K111 + Kin) | |
| function_4_v112(K112, V112, A3_2, Kin_2) = V112 * A3_2 * Kin_2 / (K112 + Kin_2) | |
| function_4_v108(K108, V108, A2_2, RsT) = V108 * A2_2 * RsT / (K108 + RsT) | |
| function_4_v106(K106, V106, HRG, RsD) = V106 * HRG * RsD / (K106 + RsD) | |
| function_4_v105(K105, V105, EGF, RsD) = V105 * EGF * RsD / (K105 + RsD) | |
| function_4_v103(K103, V103, A2, HRG) = V103 * HRG * A2 / (K103 + A2) | |
| function_4_v102(K102, V102, A1_2) = V102 * A1_2 / (K102 + A1_2) | |
| function_4_v101(K101, V101, A1, EGF) = V101 * EGF * A1 / (K101 + A1) | |
| function_4_v063(cytoplasm, nucleus, p63, Fn) = cytoplasm * p63 * Fn / nucleus | |
| function_4_v060(p60, FmRNA) = p60 * FmRNA | |
| function_4_v057(K57, V57, n57, FOSn_2) = V57 * pow(FOSn_2, n57) / (pow(K57, n57) + pow(FOSn_2, n57)) | |
| function_4_v044(K44, V44, FOSn_2) = V44 * FOSn_2 / (K44 + FOSn_2) | |
| function_4_v042(K42, V42, ppERK_n, FOSn) = V42 * ppERK_n * FOSn / (K42 + FOSn) | |
| function_4_v030(K30, V30, pElk1_n) = V30 * pElk1_n / (K30 + pElk1_n) | |
| function_4_v028(K28, V28, pCREB_n) = V28 * pCREB_n / (K28 + pCREB_n) | |
| function_4_v027(K27, V27, CREB_n, pRSK_n) = V27 * pRSK_n * CREB_n / (K27 + CREB_n) | |
| function_4_v058(Vn, p58, PreFmRNA) = p58 * Vn * PreFmRNA | |
| function_4_v034(p34, c_FOSmRNA) = p34 * c_FOSmRNA | |
| function_4_v026(KexRSKP, KimRSKP, Vc, Vn, pRSK_n, pRSK_c) = KimRSKP * Vc * pRSK_c - KexRSKP * Vn * pRSK_n | |
| function_4_v025(K25, V25, pRSK_c) = V25 * pRSK_c / (K25 + pRSK_c) | |
| function_4_v032(Vn, p32, PreFOSmRNA) = p32 * Vn * PreFOSmRNA | |
| function_4_v013(p13, DUSPmRNA) = p13 * DUSPmRNA | |
| function_4_v011(Vn, p11, PreDUSPmRNA) = p11 * Vn * PreDUSPmRNA | |
| function_4_v009(KexERKPP, KimERKPP, Vc, Vn, ppERK_c, ppERK_n) = KimERKPP * Vc * ppERK_c - KexERKPP * Vn * ppERK_n | |
| function_4_v029(K29, V29, ppERK_n, Elk1_n) = V29 * ppERK_n * Elk1_n / (K29 + Elk1_n) | |
| function_4_v019(KexDUSPP, KimDUSPP, Vc, Vn, pDUSP_c, pDUSP_n) = KimDUSPP * Vc * pDUSP_c - KexDUSPP * Vn * pDUSP_n |
| Trigger | Assignments |
|---|