begin name wegner1 end name begin reactions 103 {1.0}101 + {1.0}99 = {1.0}105 125 {1.0}99 = {1.0}129 132 {1.0}105 = {1.0}129 + {1.0}101 139 {1.0}129 = {1.0}19 149 {1.0}147 + {2.0}129 = {1.0}153 156 {1.0}147 = {1.0}5 164 {1.0}153 = {1.0}9 172 {1.0}25 = {1.0}174 178 {1.0}27 = {1.0}181 192 {1.0}181 + {1.0}96 = {1.0}$EXTERNAL 194 {1.0}174 + {1.0}96 = {1.0}198 29 {1.0}species27 = {1.0}5 + {2.0}species17 31 {1.0}9 = {1.0}species19 33 {1.0}9 + {2.0}11 = {1.0}13 35 {3.0}15 + {1.0}species13 = {3.0}19 37 {1.0}5 + {2.0}19 = {1.0}9 39 {1.0}19 = {1.0}21 41 {1.0}21 + {1.0}15 = {1.0}$EXTERNAL 43 {1.0}15 + {1.0}25 = {1.0}27 77 {2.0}75 = {1.0}79 86 {1.0}79 + {2.0}84 = {1.0}96 reaction1 {1.0}$EXTERNAL = {1.0}75 reaction10 {1.0}84 = {1.0}$EXTERNAL reaction11 {1.0}75 = {1.0}$EXTERNAL reaction12 {1.0}79 = {2.0}75 reaction13 {1.0}$EXTERNAL = {1.0}99 reaction14 {1.0}$EXTERNAL = {1.0}147 reaction15 {1.0}147 = {1.0}$EXTERNAL reaction16 {1.0}101 = {1.0}$EXTERNAL reaction17 {1.0}129 = {1.0}99 reaction18 {1.0}species2 = {1.0}$EXTERNAL reaction19 {1.0}15 = {1.0}species1 reaction2 {1.0}$EXTERNAL = {1.0}101 reaction20 {1.0}99 = {1.0}$EXTERNAL reaction21 {1.0}species2 = {1.0}11 reaction22 {1.0}$EXTERNAL = {1.0}species3 reaction23 {1.0}species3 = {1.0}$EXTERNAL reaction24 {1.0}species4 = {1.0}species3 reaction25 {1.0}species18 = {1.0}species27 reaction26 {1.0}species20 = {1.0}species17 reaction27 {1.0}species3 = {1.0}species4 reaction28 {1.0}species5 = {1.0}species4 + {1.0}101 reaction29 {1.0}species17 = {1.0}$EXTERNAL reaction3 {1.0}$EXTERNAL = {1.0}174 reaction30 {1.0}species3 = {1.0}species17 reaction31 {1.0}101 + {1.0}species3 = {1.0}species5 reaction32 {1.0}species19 = {1.0}5 + {2.0}21 reaction33 {1.0}species4 = {1.0}species20 reaction34 {1.0}147 + {2.0}species4 = {1.0}species6 reaction35 {1.0}5 + {2.0}species20 = {1.0}species18 reaction36 {1.0}species18 + {2.0}11 = {1.0}species21 reaction37 {1.0}species6 = {1.0}species18 reaction38 {1.0}species14 = {1.0}species20 reaction39 {1.0}174 = {1.0}$EXTERNAL reaction4 {1.0}$EXTERNAL = {1.0}species1 reaction40 {1.0}species7 = {1.0}$EXTERNAL reaction41 {1.0}species7 = {1.0}species22 reaction42 {1.0}$EXTERNAL = {1.0}species7 reaction43 {1.0}species1 = {1.0}$EXTERNAL reaction44 {1.0}5 + {1.0}species22 = {1.0}species23 reaction45 {1.0}species3 + {1.0}species7 = {1.0}species8 reaction46 {1.0}species24 + {1.0}25 = {1.0}species25 reaction47 {1.0}$EXTERNAL = {1.0}species9 reaction48 {1.0}species18 + {2.0}species22 = {1.0}species26 reaction49 {1.0}species10 + {1.0}96 = {1.0}$EXTERNAL reaction5 {1.0}$EXTERNAL = {1.0}species2 reaction50 {1.0}species25 = {1.0}species10 reaction51 {1.0}species9 = {1.0}$EXTERNAL reaction52 {1.0}species24 = {1.0}species9 reaction53 {1.0}species18 + {1.0}species28 = {1.0}species30 reaction54 {1.0}9 + {1.0}species28 = {1.0}species30 reaction55 {1.0}species21 + {1.0}species28 = {1.0}species29 reaction56 {1.0}13 + {1.0}species28 = {1.0}species29 reaction57 {1.0}species26 + {1.0}species28 = {1.0}species29 reaction58 {1.0}9 + {2.0}species22 = {1.0}species11 reaction59 {1.0}species11 + {1.0}species28 = {1.0}species29 reaction6 {1.0}$EXTERNAL = {1.0}84 reaction60 {1.0}species23 + {1.0}species28 = {1.0}species29 reaction61 {1.0}99 + {1.0}species7 = {1.0}species12 reaction62 {3.0}19 + {3.0}11 = {1.0}species13 reaction63 {3.0}species20 + {3.0}11 = {1.0}species14 reaction64 {1.0}9 = {1.0}$EXTERNAL reaction65 {1.0}species18 = {1.0}$EXTERNAL reaction66 {1.0}$EXTERNAL = {1.0}species15 reaction67 {1.0}species15 = {1.0}$EXTERNAL reaction68 {1.0}species13 + {3.0}species31 = {3.0}19 reaction69 {1.0}species14 + {3.0}species31 = {1.0}species20 reaction7 {1.0}5 + {1.0}11 = {1.0}species16 reaction70 {1.0}species15 = {1.0}species31 reaction8 {1.0}99 = {1.0}21 reaction9 {1.0}96 = {1.0}$EXTERNAL end reactions begin rate equations 103 = 1*(-(103k2*105[t]) + 103k1*101[t]*99[t]) 125 = 1*function3[125k, 96[t], 99[t], 125km] 132 = 1*function3[132k, 96[t], 105[t], 132km] 139 = 139k1*129[t] 149 = 1*149k1*129[t]^2*147[t] 156 = 156k1*147[t] - 156k2*5[t] 164 = 164k1*153[t] 172 = -(172k2*174[t]) + 172k1*25[t] 178 = -(178k2*181[t]) + 178k1*27[t] 192 = 1*192k1*181[t]*96[t] 194 = 1*(-(194k2*198[t]) + 194k1*174[t]*96[t]) 29 = 29k1*3*species27[t] 31 = 3*function1[9[t], 31Km, 31V] 33 = 3*(-(33k2*13[t]) + 33k1*11[t]^2*9[t]) 35 = 35k1*species13[t]*15[t]^3 37 = 3*37k1*19[t]^2*5[t] 39 = 3*function1[19[t], 39Km, 39V] 41 = 3*41k1*15[t]*21[t] 43 = 3*(43k1*15[t]*25[t] - 43k2*27[t]) 77 = 1*function2[parameter1, 77k, 75[t], 75[t]] 86 = 1*(86k1*79[t]*84[t]^2 - 86k2*96[t]) reaction1 = 1*function4[reaction1v] reaction10 = reaction10k1*1*84[t] reaction11 = reaction11k1*1*75[t] reaction12 = reaction12k1*1*79[t] reaction13 = 1*function4[reaction13v] reaction14 = 1*function4[reaction14v] reaction15 = reaction15k1*1*147[t] reaction16 = reaction16k1*1*101[t] reaction17 = 1*function1[129[t], reaction17Km, reaction17V] reaction18 = reaction18k1*1*species2[t] reaction19 = -(reaction19k2*species1[t]) + reaction19k1*15[t] reaction2 = 1*function5[reaction2k, reaction2k1, species30[t]] reaction20 = reaction20k1*1*99[t] reaction21 = reaction21k1*species2[t] - reaction21k2*11[t] reaction22 = 1*function4[reaction22v] reaction23 = reaction23k1*1*species3[t] reaction24 = 1*function1[species4[t], reaction24Km, reaction24V] reaction25 = 3*function1[species18[t], reaction25Km, reaction25V] reaction26 = 3*function1[species20[t], reaction26Km, reaction26V] reaction27 = 1*function3[reaction27k, 96[t], species3[t], reaction27km] reaction28 = 1*function3[reaction28k, 96[t], species5[t], reaction28km] reaction29 = reaction29k1*3*species17[t] reaction3 = 1*function6[reaction3k, reaction3k1, species30[t], species16[t], species23[t]] reaction30 = -(reaction30k2*species17[t]) + reaction30k1*species3[t] reaction31 = 1*(-(reaction31k2*species5[t]) + reaction31k1*species3[t]*101[t]) reaction32 = reaction32k1*3*species19[t] reaction33 = reaction33k1*species4[t] reaction34 = reaction34k1*1*species4[t]^2*147[t] reaction35 = reaction35k1*3*species20[t]^2*5[t] reaction36 = 3*(-(reaction36k2*species21[t]) + reaction36k1*species18[t]*11[t]^2) reaction37 = reaction37k1*species6[t] reaction38 = reaction38k1*species14[t] reaction39 = 1*function7[reaction39k1, 174[t], species15[t]] reaction4 = 1*function5[reaction4k, reaction4k1, species30[t]] reaction40 = reaction40k1*1*species7[t] reaction41 = -(reaction41k2*species22[t]) + reaction41k1*species7[t] reaction42 = 1*function5[reaction42k, reaction42k1, species30[t]] reaction43 = 1*function7[reaction43k1, species1[t], 174[t]] reaction44 = 3*(-(reaction44k2*species23[t]) + reaction44k1*species22[t]*5[t]) reaction45 = 1*(reaction45k1*species3[t]*species7[t] - reaction45k2*species8[t]) reaction46 = 3*(-(reaction46k2*species25[t]) + reaction46k1*species24[t]*25[t]) reaction47 = 1*function5[reaction47k, reaction47k1, species30[t]] reaction48 = 3*(reaction48k1*species18[t]*species22[t]^2 - reaction48k2*species26[t]) reaction49 = reaction49k1*1*species10[t]*96[t] reaction5 = 1*function5[reaction5k, reaction5k1, species30[t]] reaction50 = -(reaction50k2*species10[t]) + reaction50k1*species25[t] reaction51 = 1*function7[reaction51k1, species9[t], 174[t]] reaction52 = reaction52k1*species24[t] - reaction52k2*species9[t] reaction53 = 3*(reaction53k1*species18[t]*species28[t] - reaction53k2*species30[t]) reaction54 = 3*(-(reaction54k2*species30[t]) + reaction54k1*species28[t]*9[t]) reaction55 = 3*(reaction55k1*species21[t]*species28[t] - reaction55k2*species29[t]) reaction56 = 3*(-(reaction56k2*species29[t]) + reaction56k1*species28[t]*13[t]) reaction57 = 3*(reaction57k1*species26[t]*species28[t] - reaction57k2*species29[t]) reaction58 = -(reaction58k2*species11[t]) + reaction58k1*species22[t]^2*9[t] reaction59 = reaction59k1*species11[t]*species28[t] - reaction59k2*species29[t] reaction6 = 1*function4[reaction6v] reaction60 = 3*(reaction60k1*species23[t]*species28[t] - reaction60k2*species29[t]) reaction61 = 1*(-(reaction61k2*species12[t]) + reaction61k1*species7[t]*99[t]) reaction62 = -(reaction62k2*species13[t]) + reaction62k1*11[t]^3*19[t]^3 reaction63 = -(reaction63k2*species14[t]) + reaction63k1*species20[t]^3*11[t]^3 reaction64 = reaction64k1*3*9[t] reaction65 = reaction65k1*3*species18[t] reaction66 = 1*function4[reaction66v] reaction67 = reaction67k1*1*species15[t] reaction68 = reaction68k1*species13[t]*species31[t]^3 reaction69 = reaction69k1*species14[t]*species31[t]^3 reaction7 = 3*(-(reaction7k2*species16[t]) + reaction7k1*11[t]*5[t]) reaction70 = reaction70k1*species15[t] - reaction70k2*species31[t] reaction8 = -(reaction8k2*21[t]) + reaction8k1*99[t] reaction9 = reaction9k1*1*96[t] end rate equations begin parameters parameter1 = 0.01 reaction31k1 = 1.0 reaction31k2 = 0.1 reaction32k1 = 0.0492 reaction33k1 = 16.6 reaction34k1 = 1000.0 reaction35k1 = 255.068 reaction36k1 = 1.6 reaction36k2 = 1.6 reaction37k1 = 0.16 reaction38k1 = 0.232 reaction39k1 = 0.1 reaction40k1 = 0.232 reaction41k1 = 0.1 reaction41k2 = 0.2 reaction42k = "2e-05" reaction42k1 = 0.00055 reaction43k1 = 0.05 reaction44k1 = 1.0 reaction44k2 = 0.05288 reaction45k1 = 0.1 reaction45k2 = 0.1 reaction46k1 = 2.9 reaction46k2 = 0.2 reaction47k = 0.0001 reaction47k1 = 0.0022 reaction48k1 = 1.6 reaction48k2 = 1.6 reaction49k1 = 1900.0 reaction50k1 = 1.0 reaction50k2 = 0.01 reaction51k1 = 0.5 reaction52k1 = 0.05 reaction52k2 = 3.0 reaction53k1 = 0.463 reaction53k2 = 0.102 reaction54k1 = 0.463 reaction54k2 = 0.102 reaction55k1 = 0.2 reaction55k2 = 0.2 reaction56k1 = 0.2 reaction56k2 = 0.2 reaction57k1 = 0.2 reaction57k2 = 0.2 reaction58k1 = 1.6 reaction58k2 = 1.6 reaction59k1 = 0.2 reaction59k2 = 0.2 reaction60k1 = 0.1 reaction60k2 = 0.1 reaction61k1 = 0.1 reaction61k2 = 0.1 reaction62k1 = 1.0 reaction62k2 = 1.0 reaction63k1 = 1.0 reaction63k2 = 1.0 reaction64k1 = 0.005 reaction65k1 = 0.005 reaction66v = "2e-05" reaction67k1 = 0.1 reaction68k1 = 0.1 reaction69k1 = 0.1 reaction70k1 = 0.1 reaction70k2 = 0.1 29k1 = 0.0492 31Km = 40.0 31V = 2.34 33k1 = 1.6 33k2 = 1.6 35k1 = 0.232 37k1 = 255.068 39Km = 0.53 39V = 3.51 41k1 = 0.2 43k1 = 2.9 43k2 = 0.2 77k = 9.45 86k1 = 0.03333 86k2 = 0.03333 103k1 = 1.0 103k2 = 0.1 125k = 1000.0 125km = 0.0318 132k = 3.51 132km = 0.53 139k1 = 16.6 149k1 = 1000.0 156k1 = 0.156 156k2 = 0.156 164k1 = 0.16 172k1 = 0.1 172k2 = 0.01 178k1 = 1.0 178k2 = 0.01 192k1 = 1900.0 194k1 = 8.69 194k2 = 0.01 reaction1v = 0.00146 reaction2k = 0.0001 reaction2k1 = 0.031 reaction3k = 0.0001 reaction3k1 = 0.1 reaction4k = 0.000228 reaction4k1 = 0.0285 reaction5k = "2e-05" reaction5k1 = 0.00055 reaction6v = 0.0125 reaction7k1 = 1.0 reaction7k2 = 0.05288 reaction8k1 = 0.156 reaction8k2 = 0.336 reaction9k1 = 0.027778 reaction10k1 = 0.027778 reaction11k1 = 0.027778 reaction12k1 = 0.03333 reaction13v = 0.0156 reaction14v = 0.01183 reaction15k1 = 0.1266 reaction16k1 = 0.065 reaction17Km = 3.51 reaction17V = 0.53 reaction18k1 = 0.232 reaction19k1 = 0.2333 reaction19k2 = 1.8056 reaction20k1 = 0.2 reaction21k1 = 0.1 reaction21k2 = 0.2 reaction22v = 0.04528 reaction23k1 = 0.2 reaction24Km = 3.51 reaction24V = 0.53 reaction25Km = 40.0 reaction25V = 2.34 reaction26Km = 0.53 reaction26V = 3.51 reaction27k = 1000.0 reaction27km = 0.0318 reaction28k = 3.51 reaction28km = 0.53 reaction29k1 = 0.2 reaction30k1 = 0.156 reaction30k2 = 0.336 1 = 1.0 3 = 1.0 end parameters begin initial conditions 101[0] = 101i 105[0] = 105i 11[0] = 11i 129[0] = 129i 13[0] = 13i 147[0] = 147i 15[0] = 15i 153[0] = 153i 174[0] = 174i 181[0] = 181i 19[0] = 19i 198[0] = 198i 21[0] = 21i 25[0] = 25i 27[0] = 27i 5[0] = 5i 75[0] = 75i 79[0] = 79i 84[0] = 84i 9[0] = 9i 96[0] = 96i 99[0] = 99i species1[0] = species1i species10[0] = species10i species11[0] = species11i species12[0] = species12i species13[0] = species13i species14[0] = species14i species15[0] = species15i species16[0] = species16i species17[0] = species17i species18[0] = species18i species19[0] = species19i species2[0] = species2i species20[0] = species20i species21[0] = species21i species22[0] = species22i species23[0] = species23i species24[0] = species24i species25[0] = species25i species26[0] = species26i species27[0] = species27i species28[0] = species28i species29[0] = species29i species3[0] = species3i species30[0] = species30i species31[0] = species31i species4[0] = species4i species5[0] = species5i species6[0] = species6i species7[0] = species7i species8[0] = species8i species9[0] = species9i end initial conditions begin initial values 101i = 0.0 105i = 0.0 11i = 0.0 129i = 0.0 13i = 0.0 147i = 0.0 15i = 0.0 153i = 0.0 174i = 0.0 181i = 0.0 19i = 0.0 198i = 0.0 21i = 0.0 25i = 0.0 27i = 0.0 5i = 0.0 75i = 0.0 79i = 0.0 84i = 0.0 9i = 0.0 96i = 0.0 99i = 0.0 species1i = 0.0 species10i = 0.0 species11i = 0.0 species12i = 0.0 species13i = 0.0 species14i = 0.0 species15i = 0.0 species16i = 0.0 species17i = 0.0 species18i = 0.0 species19i = 0.0 species2i = 0.0 species20i = 0.0 species21i = 0.0 species22i = 0.0 species23i = 0.0 species24i = 0.0 species25i = 0.0 species26i = 0.0 species27i = 0.0 species28i = 0.0999999951844375 species29i = 0.0 species3i = 0.0 species30i = 0.0 species31i = 0.0 species4i = 0.0 species5i = 0.0 species6i = 0.0 species7i = 0.0 species8i = 0.0 species9i = 0.0 end initial values begin assignment rules parameter2 := 2*species16[t] + species2[t] + 11[t] parameter4 := species1[t] + 15[t] + 181[t] + 27[t] parameter5 := species19[t] + 105[t] + 129[t] + 13[t] + 153[t] + 19[t] + 21[t] + 9[t] + 99[t] parameter6 := species16[t] + species18[t] + species19[t] + species21[t] + species23[t] + species26[t] + species27[t] + species6[t] + 13[t] + 147[t] + 153[t] + 5[t] + 9[t] parameter9 := species6[t] + 147[t] + 153[t] parameter10 := species11[t] + species16[t] + 2*species18[t] + species19[t] + species21[t] + species23[t] + 2*species26[t] + species27[t] + 13[t] + 5[t] + 9[t] parameter8 := species17[t] + species18[t] + species20[t] + species21[t] + species26[t] + species27[t] + species3[t] + species4[t] + species5[t] + species6[t] + species8[t] parameter7 := species18[t] + species20[t] + species21[t] + species26[t] + species4[t] + species6[t] parameter3 := 174[t] + 181[t] + 198[t] + 25[t] + 27[t] end assignment rules begin function definitions function2[TGFbeta_,k_,s_,s2_] := k*s*s2*TGFbeta function6[k_,k1_,m_,m2_,m3_] := (k + k1*m)/(1 + m2 + m3) function5[k_,k1_,m_] := k + k1*m function7[k1_,substrate_,modifier_] := k1*(1 + modifier)*substrate function3[k_,rec_,s_,km_] := (k*rec*s)/(km + s) function1[substrate_,Km_,V_] := (substrate*V)/(Km + substrate) function4[v_] := v end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units