begin name tyson13 end name begin reactions r1 {1.0}$EXTERNAL = {1.0}R r2 {1.0}$EXTERNAL = {1.0}R r3 {1.0}R = {1.0}$EXTERNAL r4 {1.0}$EXTERNAL = {1.0}$EXTERNAL r5 {1.0}$EXTERNAL = {1.0}$EXTERNAL end reactions begin rate equations r1 = env*Ep*k0 r2 = env*k1*S r3 = env*k2*R[t] r4 = (E*env*k3*R[t])/(E + J3) r5 = (env*Ep*k4)/(Ep + J4) end rate equations begin parameters Et = 1.0 J3 = 0.05 J4 = 0.05 k0 = 0.4 k1 = 0.01 k2 = 1.0 k3 = 1.0 k4 = 0.2 S = 0.0 env = 1.0 end parameters begin initial conditions R[0] = Ri end initial conditions begin initial values Ri = 0.0 end initial values begin assignment rules E := -Ep + Et Ep := goldbeterkoshland[k3*R[t], k4, J3, J4] end assignment rules begin function definitions goldbeterkoshland[v1_,v2_,J1_,J2_] := (2*J2*v1)/(-v1 + J2*v1 + v2 + J1*v2 + Sqrt[-4*J2*v1*(-v1 + v2) + (-v1 + J2*v1 + v2 + J1*v2)^2]) end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units