#shen2 #reactions v1: {1.0}NAD + {1.0}XYL = {1.0}XLAC (Eb*VmXDH*NAD*XYL)/(1000*KmXDHNAD*KmXDHXYL*(1 + (Ntot - NAD)/KmXDHNADH + NAD/KmXDHNAD)*(1 + XYL/KmXDHXYL + XLAC/KmXDHXLAC)) v2: {1.0}XLAC = {1.0}XA kXLA*XLAC v3: {1.0}XLAC = {1.0}XA (Ec*VmXLA*XLAC)/(1000*KmXLAXLAC*(1 + XLAC/KmXLAXLAC + XA/KmXLAXA)) v4: {1.0}XA = {1.0}KDX (Ed*VmXAD*XA)/(1000*KmXADXA*(1 + (Ntot - NAD)/KiXADNADH)*(1 + KDX/KmXADKDX + XA/KmXADXA)) v5: {1.0}KDX = {1.0}KGSA (Ex*fracX*VmKDXD*KDX)/(1000*KmKDXDKDX*(1 + KGSA/KmKDXDKGSA + KDX/KmKDXDKDX)*(1 + KG/KiKDXDakg + LAC/KiKDXDLAC + PYR/KiKDXDPYR + XA/KiKDXDxylonate)) v6: {1.0}KGSA + {1.0}NAD = {1.0}KG Ea / 1000 * (VmKGSADH * KGSA * NAD / (KmKGSADHKGSA * KmKGSADHNAD)) / ((1 + KGSA / KmKGSADHKGSA + KG / KmKGSADHKG) * (1 + NAD / KmKGSADHNAD + (Ntot - NAD) / KmKGSADHNADH) + KDX / KmKGSADHKDX * (1 + NAD / KmKGSADHNAD + (Ntot - NAD) / KmKGSADHNADH2)) v7: {1.0}PYR = {1.0}NAD + {1.0}LAC kLDH*(Ntot - NAD)*PYR #parameters Ea = 10.0 Eb = 2.5 Ec = 0.8 Ed = 8.67 Ex = 0.5 KiKDXDLAC = 27.9762 KiKDXDPYR = 17.9168 KiKDXDakg = 14.7919 KiKDXDxylonate = 18.3001 KiXADNADH = 10.4629 KmKDXDKDX = 0.207656 KmKDXDKGSA = 0.288658 KmKGSADHKDX = 0.2136 KmKGSADHKG = 0.279059 KmKGSADHKGSA = 0.0217501 KmKGSADHNAD = 0.596286 KmKGSADHNADH = 0.2674 KmKGSADHNADH2 = 0.0241 KmXADKDX = 0.862428 KmXADXA = 0.793955 KmXDHNAD = 0.161239 KmXDHNADH = 0.0297091 KmXDHXLAC = 0.535734 KmXDHXYL = 0.19851 KmXLAXA = 0.0381004 KmXLAXLAC = 0.445269 Ntot = 8.0 VmKDXD = 107.075 VmKGSADH = 49.3374 VmXAD = 42.359 VmXDH = 119.743 VmXLA = 944.406 fracX = 0.251104 kLDH = 10.0 kXLA = 0.00718272 default = 1.0 #initial values KDX = 0.0 KG = 0.0 KGSA = 0.0 LAC = 0.0 NAD = 8.0 PYR = 0.0 XA = 0.0 XLAC = 0.0 XYL = 5.0 #assignment rules