begin name sharp1 end name begin reactions reaction1 {1.0}$species4 + {1.0}$species3 + {1.0}$species1 + {1.0}$species8 + {1.0}$species6 + {1.0}$species2 + {1.0}$species7 = {1.0}species5 reaction10 {2.0}species21 = {1.0}species24 + {2.0}species21 reaction11 {1.0}$species22 = {1.0}species24 reaction12 {1.0}species24 = {1.0}$species23 reaction13 {1.0}species24 + {1.0}$species25 + {1.0}$species27 + {1.0}$species26 + {1.0}$species16 = {1.0}species28 reaction14 {1.0}species14 = {1.0}species15 reaction15 {1.0}species29 + {1.0}species31 = {1.0}species30 reaction16 {1.0}species15 + {1.0}species30 = {1.0}species32 reaction17 {1.0}species33 + {1.0}species31 = {1.0}species34 reaction18 {1.0}species15 + {1.0}species34 = {1.0}species35 reaction19 {1.0}species36 + {1.0}species31 = {1.0}species37 reaction2 {1.0}species9 + {1.0}$species10 = {1.0}species11 reaction20 {1.0}species15 + {1.0}species37 = {1.0}species38 reaction21 {1.0}species32 = {1.0}species15 + {1.0}species31 reaction22 {1.0}species35 = {1.0}species15 + {1.0}species31 reaction23 {1.0}species38 = {1.0}species15 + {1.0}species31 reaction24 {1.0}species30 = {1.0}species31 reaction25 {1.0}species34 = {1.0}species31 reaction26 {1.0}species37 = {1.0}species31 reaction27 {1.0}species31 = {1.0}species39 reaction28 {1.0}species40 + {1.0}species39 = {1.0}species41 reaction29 {1.0}species42 + {1.0}species39 = {1.0}species43 reaction3 {1.0}species11 + {1.0}$species12 = {1.0}species13 reaction30 {1.0}species44 + {1.0}species39 = {1.0}species45 reaction31 {1.0}$species22 = {1.0}species46 reaction32 {2.0}species39 = {1.0}species46 + {2.0}species39 reaction33 {1.0}species46 = {1.0}$species23 reaction34 {1.0}$species22 = {1.0}species47 reaction35 {1.0}species47 = {1.0}$species23 reaction36 {1.0}$species22 = {1.0}species48 reaction37 {1.0}species48 = {1.0}$species23 reaction38 {1.0}species15 + {1.0}species29 = {1.0}species49 reaction39 {1.0}species46 = {1.0}species29 + {1.0}species46 reaction4 {1.0}species14 = {1.0}species15 reaction40 {1.0}species29 = {1.0}$species23 reaction41 {1.0}species29 = {1.0}species40 reaction42 {1.0}species15 + {1.0}species33 = {1.0}species50 reaction43 {1.0}species47 = {1.0}species33 + {1.0}species47 reaction44 {1.0}species33 = {1.0}$species23 reaction45 {1.0}species33 = {1.0}species42 reaction46 {1.0}species15 + {1.0}species36 = {1.0}species51 reaction47 {1.0}species48 = {1.0}species36 + {1.0}species48 reaction48 {1.0}species36 = {1.0}$species23 reaction49 {1.0}species36 = {1.0}species44 reaction5 {1.0}species15 = {1.0}species14 reaction50 {1.0}species49 + {1.0}species31 = {1.0}species32 reaction51 {1.0}species41 = {1.0}species30 reaction52 {1.0}species50 + {1.0}species31 = {1.0}species35 reaction53 {1.0}species43 = {1.0}species34 reaction54 {1.0}species51 + {1.0}species31 = {1.0}species38 reaction55 {1.0}species45 = {1.0}species37 reaction56 {1.0}species49 = {1.0}species15 reaction57 {1.0}species50 = {1.0}species15 reaction58 {1.0}species51 = {1.0}species15 reaction59 {2.0}species39 = {1.0}species24 + {2.0}species39 reaction6 {1.0}$species4 + {1.0}$species3 + {1.0}$species1 + {1.0}$species8 + {1.0}$species18 + {1.0}$species17 + {1.0}$species16 + {1.0}$species53 = {1.0}species52 reaction7 {1.0}species19 = {1.0}species20 reaction8 {1.0}species20 = {1.0}species19 reaction9 {1.0}species20 = {1.0}species21 end reactions begin rate equations reaction1 = compartment1*(reaction1k1*species1*species2*species3*species4*species6*species7*species8 - reaction1k2*species5[t]) reaction10 = compartment1*reaction10k1*species21[t]^2 reaction11 = compartment1*reaction11k1*species22 reaction12 = compartment1*reaction12k1*species24[t] reaction13 = compartment1*(reaction13k1*species16*species25*species26*species27*species24[t] - reaction13k2*species28[t]) reaction14 = compartment1*function2[reaction14k, species28[t], species14[t], reaction14Km] reaction15 = compartment1*(-(reaction15k2*species30[t]) + reaction15k1*species29[t]*species31[t]) reaction16 = compartment1*(reaction16k1*species15[t]*species30[t] - reaction16k2*species32[t]) reaction17 = compartment1*(reaction17k1*species31[t]*species33[t] - reaction17k2*species34[t]) reaction18 = compartment1*(reaction18k1*species15[t]*species34[t] - reaction18k2*species35[t]) reaction19 = compartment1*(reaction19k1*species31[t]*species36[t] - reaction19k2*species37[t]) reaction2 = compartment1*function1[reaction2k1, species5[t], species9[t], species10, reaction2k2, species11[t]] reaction20 = compartment1*(reaction20k1*species15[t]*species37[t] - reaction20k2*species38[t]) reaction21 = compartment1*reaction21k1*species32[t] reaction22 = compartment1*reaction22k1*species35[t] reaction23 = compartment1*reaction23k1*species38[t] reaction24 = compartment1*reaction24k1*species30[t] reaction25 = compartment1*reaction25k1*species34[t] reaction26 = compartment1*reaction26k1*species37[t] reaction27 = compartment1*(reaction27k1*species31[t] - reaction27k2*species39[t]) reaction28 = compartment1*(reaction28k1*species39[t]*species40[t] - reaction28k2*species41[t]) reaction29 = compartment1*(reaction29k1*species39[t]*species42[t] - reaction29k2*species43[t]) reaction3 = compartment1*(reaction3k1*species12*species11[t] - reaction3k2*species13[t]) reaction30 = compartment1*(reaction30k1*species39[t]*species44[t] - reaction30k2*species45[t]) reaction31 = compartment1*reaction31k1*species22 reaction32 = compartment1*reaction32k1*species39[t]^2 reaction33 = compartment1*reaction33k1*species46[t] reaction34 = compartment1*reaction34k1*species22 reaction35 = compartment1*reaction35k1*species47[t] reaction36 = compartment1*reaction36k1*species22 reaction37 = compartment1*reaction37k1*species48[t] reaction38 = compartment1*(reaction38k1*species15[t]*species29[t] - reaction38k2*species49[t]) reaction39 = compartment1*reaction39k1*species46[t] reaction4 = compartment1*function2[reaction4k, species13[t], species14[t], reaction4Km] reaction40 = compartment1*reaction40k1*species29[t] reaction41 = compartment1*(reaction41k1*species29[t] - reaction41k2*species40[t]) reaction42 = compartment1*(reaction42k1*species15[t]*species33[t] - reaction42k2*species50[t]) reaction43 = compartment1*reaction43k1*species47[t] reaction44 = compartment1*reaction44k1*species33[t] reaction45 = compartment1*(reaction45k1*species33[t] - reaction45k2*species42[t]) reaction46 = compartment1*(reaction46k1*species15[t]*species36[t] - reaction46k2*species51[t]) reaction47 = compartment1*reaction47k1*species48[t] reaction48 = compartment1*reaction48k1*species36[t] reaction49 = compartment1*(reaction49k1*species36[t] - reaction49k2*species44[t]) reaction5 = compartment1*reaction5k1*species15[t] reaction50 = compartment1*(-(reaction50k2*species32[t]) + reaction50k1*species31[t]*species49[t]) reaction51 = compartment1*reaction51k1*species41[t] reaction52 = compartment1*(-(reaction52k2*species35[t]) + reaction52k1*species31[t]*species50[t]) reaction53 = compartment1*reaction53k1*species43[t] reaction54 = compartment1*(-(reaction54k2*species38[t]) + reaction54k1*species31[t]*species51[t]) reaction55 = compartment1*reaction55k1*species45[t] reaction56 = compartment1*reaction56k1*species49[t] reaction57 = compartment1*reaction57k1*species50[t] reaction58 = compartment1*reaction58k1*species51[t] reaction59 = compartment1*reaction59k1*species39[t]^2 reaction6 = compartment1*(reaction6k1*species1*species16*species17*species18*species3*species4*species53*species8 - reaction6k2*species52[t]) reaction7 = compartment1*function2[reaction7k, species52[t], species19[t], reaction7Km] reaction8 = compartment1*reaction8k1*species20[t] reaction9 = compartment1*(reaction9k1*species20[t] - reaction9k2*species21[t]) end rate equations begin parameters species1 = 1.0 species10 = 1.0 species12 = 1.0 species16 = 1.0 species17 = 1.0 species18 = 1.0 species2 = 1.0 species22 = 1.0 species23 = 0.0 species25 = 1.0 species26 = 1.0 species27 = 1.0 species3 = 1.0 species4 = 1.0 species53 = 1.0 species6 = 1.0 species7 = 1.0 species8 = 1.0 reaction27k2 = "8e-05" reaction28k1 = 0.5 reaction28k2 = 0.0005 reaction29k1 = 0.5 reaction29k2 = 0.0005 reaction30k1 = 0.5 reaction30k2 = 0.0005 reaction31k1 = "1.54e-06" reaction32k1 = 0.0165 reaction33k1 = 0.00028 reaction34k1 = "1.78e-07" reaction35k1 = 0.00028 reaction36k1 = "1.27e-07" reaction37k1 = 0.00028 reaction38k1 = 0.0225 reaction38k2 = 0.00125 reaction39k1 = 0.00408 reaction40k1 = 0.000113 reaction41k1 = 0.0003 reaction41k2 = 0.0002 reaction42k1 = 0.006 reaction42k2 = 0.00175 reaction43k1 = 0.00408 reaction44k1 = 0.000113 reaction45k1 = 0.00015 reaction45k2 = 0.0001 reaction46k1 = 0.009 reaction46k2 = 0.00175 reaction47k1 = 0.00408 reaction48k1 = 0.000113 reaction49k1 = 0.00015 reaction49k2 = 0.0001 reaction50k1 = 0.5 reaction50k2 = 0.0005 reaction51k1 = 0.0138 reaction52k1 = 0.5 reaction52k2 = 0.0005 reaction53k1 = 0.0052 reaction54k1 = 0.5 reaction54k2 = 0.0005 reaction55k1 = 0.0052 reaction56k1 = 0.00407 reaction57k1 = 0.0015 reaction58k1 = 0.0022 reaction59k1 = 0.001 reaction20k1 = 0.07 reaction20k2 = 0.00175 reaction21k1 = 0.0204 reaction22k1 = 0.0075 reaction23k1 = 0.011 reaction24k1 = "2.25e-05" reaction25k1 = "2.25e-05" reaction26k1 = "2.25e-05" reaction27k1 = 0.09 reaction1k1 = 0.0001 reaction1k2 = 0.0001 reaction2k1 = 0.001 reaction2k2 = 0.001 reaction3k1 = 0.003 reaction3k2 = 0.01 reaction4k = 0.1 reaction4Km = 0.1 reaction5k1 = 0.1 reaction6k1 = 0.0001 reaction6k2 = 0.0001 reaction7k = 0.1 reaction7Km = 0.1 reaction8k1 = 0.1 reaction9k1 = 0.1 reaction9k2 = 0.1 reaction10k1 = 0.02 reaction11k1 = 0.001 reaction12k1 = 0.1 reaction13k1 = 0.1 reaction13k2 = 0.1 reaction14k = 0.1 reaction14Km = 0.1 reaction15k1 = 0.5 reaction15k2 = 0.0005 reaction16k1 = 0.185 reaction16k2 = 0.0125 reaction17k1 = 0.5 reaction17k2 = 0.0005 reaction18k1 = 0.048 reaction18k2 = 0.00175 reaction19k1 = 0.5 reaction19k2 = 0.0005 compartment1 = 1.0 end parameters begin initial conditions species11[0] = species11i species13[0] = species13i species14[0] = species14i species15[0] = species15i species19[0] = species19i species20[0] = species20i species21[0] = species21i species24[0] = species24i species28[0] = species28i species29[0] = species29i species30[0] = species30i species31[0] = species31i species32[0] = species32i species33[0] = species33i species34[0] = species34i species35[0] = species35i species36[0] = species36i species37[0] = species37i species38[0] = species38i species39[0] = species39i species40[0] = species40i species41[0] = species41i species42[0] = species42i species43[0] = species43i species44[0] = species44i species45[0] = species45i species46[0] = species46i species47[0] = species47i species48[0] = species48i species49[0] = species49i species5[0] = species5i species50[0] = species50i species51[0] = species51i species52[0] = species52i species9[0] = species9i end initial conditions begin initial values species11i = 0.0 species13i = 0.0 species14i = 0.1 species15i = 0.0 species19i = 1.0 species20i = 0.0 species21i = 0.0 species24i = 0.0 species28i = 0.0 species29i = 0.0 species30i = 0.0 species31i = 0.1 species32i = 0.0 species33i = 0.0 species34i = 0.0 species35i = 0.0 species36i = 0.0 species37i = 0.0 species38i = 0.0 species39i = 0.0 species40i = 0.0 species41i = 0.0 species42i = 0.0 species43i = 0.0 species44i = 0.0 species45i = 0.0 species46i = 0.0 species47i = 0.0 species48i = 0.0 species49i = 0.0 species5i = 0.0 species50i = 0.0 species51i = 0.0 species52i = 0.0 species9i = 1.0 end initial values begin assignment rules end assignment rules begin function definitions function2[k_,Enzyme_,Substrate_,Km_] := (Enzyme*k*Substrate)/(Km + Substrate) function1[k1_,Enzyme_,Substrate1_,Substrate2_,k2_,Product_] := -(k2*Product) + Enzyme*k1*Substrate1*Substrate2 end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units