begin name schoeberl1 end name begin reactions v1 {1.0}x2 + {1.0}$x1 = {1.0}x3 v10 {1.0}x6 + {1.0}x16 = {1.0}x10 v100 {1.0}x60 + {1.0}x81 = {1.0}x85 v101 {1.0}x85 = {1.0}x55 + {1.0}x60 v102 {1.0}x15 = {1.0}x17 v103 {1.0}x32 = {1.0}x63 v104 {1.0}x33 = {1.0}x64 v105 {1.0}x25 = {1.0}x19 v106 {1.0}x25 + {1.0}x12 = {1.0}x88 v107 {1.0}x88 = {1.0}x9 + {1.0}x19 v108 {1.0}x27 = {1.0}x20 v109 {1.0}x27 + {1.0}x12 = {1.0}x89 v11 {2.0}x10 = {1.0}x11 v110 {1.0}x89 = {1.0}x9 + {1.0}x20 v111 {1.0}x29 = {1.0}x21 v112 {1.0}x29 + {1.0}x12 = {1.0}x90 v113 {1.0}x90 = {1.0}x9 + {1.0}x21 v114 {1.0}x34 = {1.0}x65 v115 {1.0}x34 + {1.0}x12 = {1.0}x91 v116 {1.0}x91 = {1.0}x9 + {1.0}x65 v117 {1.0}x35 = {1.0}x66 v118 {1.0}x35 + {1.0}x12 = {1.0}x92 v119 {1.0}x92 = {1.0}x9 + {1.0}x66 v12 {1.0}x11 = {1.0}x8 v120 {1.0}x36 = {1.0}x67 v121 {1.0}x36 + {1.0}x12 = {1.0}x93 v122 {1.0}x93 = {1.0}x9 + {1.0}x67 v123 {1.0}x37 = {1.0}x68 v124 {1.0}x37 + {1.0}x12 = {1.0}x94 v125 {1.0}x94 = {1.0}x68 + {1.0}x9 v13 {1.0}$EXTERNAL = {1.0}x2 v14 {1.0}x8 + {1.0}x14 = {1.0}x17 v15 {1.0}x9 = {1.0}x12 v16 {1.0}x22 + {1.0}x15 = {1.0}x23 v17 {1.0}x24 + {1.0}x23 = {1.0}x25 v18 {1.0}x26 + {1.0}x25 = {1.0}x27 v19 {1.0}x27 = {1.0}x28 + {1.0}x25 v2 {2.0}x3 = {1.0}x4 v20 {1.0}x25 + {1.0}x43 = {1.0}x29 v21 {1.0}x29 = {1.0}x25 + {1.0}x26 v22 {1.0}x31 + {1.0}x15 = {1.0}x32 v23 {1.0}x32 = {1.0}x33 v24 {1.0}x22 + {1.0}x33 = {1.0}x34 v25 {1.0}x24 + {1.0}x34 = {1.0}x35 v26 {1.0}x26 + {1.0}x35 = {1.0}x36 v27 {1.0}x36 = {1.0}x35 + {1.0}x28 v28 {1.0}x28 + {1.0}x41 = {1.0}x42 v29 {1.0}x42 = {1.0}x43 + {1.0}x45 v3 {1.0}x4 = {1.0}x5 v30 {1.0}x35 + {1.0}x43 = {1.0}x37 v31 {1.0}x37 = {1.0}x35 + {1.0}x26 v32 {1.0}x35 = {1.0}x15 + {1.0}x38 v33 {1.0}x38 = {1.0}x40 + {1.0}x30 v34 {1.0}x25 = {1.0}x15 + {1.0}x30 v35 {1.0}x30 = {1.0}x24 + {1.0}x22 v36 {1.0}x40 = {1.0}x31 v37 {1.0}x33 = {1.0}x15 + {1.0}x40 v38 {1.0}x22 + {1.0}x40 = {1.0}x39 v39 {1.0}x34 = {1.0}x15 + {1.0}x39 v4 {1.0}x23 + {1.0}x12 = {1.0}x7 v40 {1.0}x24 + {1.0}x39 = {1.0}x38 v41 {1.0}x30 + {1.0}x33 = {1.0}x35 v42 {1.0}x44 + {1.0}x45 = {1.0}x46 v43 {1.0}x46 = {1.0}x41 + {1.0}x44 v44 {1.0}x47 + {1.0}x45 = {1.0}x48 v45 {1.0}x48 = {1.0}x49 + {1.0}x45 v46 {1.0}x49 + {1.0}x45 = {1.0}x50 v47 {1.0}x50 = {1.0}x51 + {1.0}x45 v48 {1.0}x51 + {1.0}x53 = {1.0}x52 v49 {1.0}x52 = {1.0}x49 + {1.0}x53 v5 {1.0}x7 = {1.0}x18 + {1.0}x9 v50 {1.0}x53 + {1.0}x49 = {1.0}x54 v51 {1.0}x54 = {1.0}x47 + {1.0}x53 v52 {1.0}x55 + {1.0}x51 = {1.0}x56 v53 {1.0}x56 = {1.0}x51 + {1.0}x57 v54 {1.0}x51 + {1.0}x57 = {1.0}x58 v55 {1.0}x58 = {1.0}x59 + {1.0}x51 v56 {1.0}x59 + {1.0}x60 = {1.0}x61 v57 {1.0}x61 = {1.0}x57 + {1.0}x60 v58 {1.0}x60 + {1.0}x57 = {1.0}x62 v59 {1.0}x62 = {1.0}x55 + {1.0}x60 v6 {1.0}x2 = {1.0}x6 v60 {1.0}x6 = {1.0}x86 v61 {1.0}x16 = {1.0}x13 v62 {1.0}x8 = {1.0}x87 v63 {1.0}x17 + {1.0}x22 = {1.0}x18 v64 {1.0}x24 + {1.0}x18 = {1.0}x19 v65 {1.0}x26 + {1.0}x19 = {1.0}x20 v66 {1.0}x20 = {1.0}x69 + {1.0}x19 v67 {1.0}x71 + {1.0}x19 = {1.0}x21 v68 {1.0}x21 = {1.0}x19 + {1.0}x26 v69 {1.0}x31 + {1.0}x17 = {1.0}x63 v7 {1.0}x5 = {1.0}x8 v70 {1.0}x63 = {1.0}x64 v71 {1.0}x22 + {1.0}x64 = {1.0}x65 v72 {1.0}x24 + {1.0}x65 = {1.0}x66 v73 {1.0}x26 + {1.0}x66 = {1.0}x67 v74 {1.0}x67 = {1.0}x66 + {1.0}x69 v75 {1.0}x69 + {1.0}x41 = {1.0}x70 v76 {1.0}x70 = {1.0}x71 + {1.0}x72 v77 {1.0}x71 + {1.0}x66 = {1.0}x68 v78 {1.0}x68 = {1.0}x66 + {1.0}x26 v79 {1.0}x66 = {1.0}x17 + {1.0}x38 v8 {1.0}x5 + {1.0}x14 = {1.0}x15 v80 {1.0}x19 = {1.0}x17 + {1.0}x30 v81 {1.0}x64 = {1.0}x17 + {1.0}x40 v82 {1.0}x65 = {1.0}x17 + {1.0}x39 v83 {1.0}x30 + {1.0}x64 = {1.0}x66 v84 {1.0}x44 + {1.0}x72 = {1.0}x73 v85 {1.0}x73 = {1.0}x41 + {1.0}x44 v86 {1.0}x47 + {1.0}x72 = {1.0}x74 v87 {1.0}x74 = {1.0}x75 + {1.0}x72 v88 {1.0}x72 + {1.0}x75 = {1.0}x76 v89 {1.0}x76 = {1.0}x72 + {1.0}x77 v9 {1.0}x23 = {1.0}x18 v90 {1.0}x77 + {1.0}x53 = {1.0}x78 v91 {1.0}x78 = {1.0}x75 + {1.0}x53 v92 {1.0}x53 + {1.0}x75 = {1.0}x79 v93 {1.0}x79 = {1.0}x47 + {1.0}x53 v94 {1.0}x55 + {1.0}x77 = {1.0}x80 v95 {1.0}x80 = {1.0}x81 + {1.0}x77 v96 {1.0}x77 + {1.0}x81 = {1.0}x82 v97 {1.0}x82 = {1.0}x83 + {1.0}x77 v98 {1.0}x83 + {1.0}x60 = {1.0}x84 v99 {1.0}x84 = {1.0}x81 + {1.0}x60 end reactions begin rate equations v1 = k1*x1*x1mult*x2[t] - kr1*x3[t] v10 = -(kr10*x10[t]) + k10*x16[t]*x6[t] v100 = k58*x60[t]*x81[t] - kr58*x85[t] v101 = k59*x85[t] v102 = k6*x15[t] - kr6*x17[t] v103 = k6*x32[t] - kr6*x63[t] v104 = k6*x33[t] - kr6*x64[t] v105 = -(kr6*x19[t]) + k6*x25[t] v106 = k4*x12[t]*x25[t] - kr4*x88[t] v107 = k5*x88[t] v108 = -(kr6*x20[t]) + k6*x27[t] v109 = k4*x12[t]*x27[t] - kr4*x89[t] v11 = k2*x10[t]^2 - kr2*x11[t] v110 = k5*x89[t] v111 = -(kr6*x21[t]) + k6*x29[t] v112 = k4*x12[t]*x29[t] - kr4*x90[t] v113 = k5*x90[t] v114 = k6*x34[t] - kr6*x65[t] v115 = k4*x12[t]*x34[t] - kr4*x91[t] v116 = k5*x91[t] v117 = k6*x35[t] - kr6*x66[t] v118 = k4*x12[t]*x35[t] - kr4*x92[t] v119 = k5*x92[t] v12 = k3*x11[t] - kr3*x8[t] v120 = k6*x36[t] - kr6*x67[t] v121 = k4*x12[t]*x36[t] - kr4*x93[t] v122 = k5*x93[t] v123 = k6*x37[t] - kr6*x68[t] v124 = k4*x12[t]*x37[t] - kr4*x94[t] v125 = k5*x94[t] v13 = k13 v14 = -(kr14*x17[t]) + k14*x14[t]*x8[t] v15 = k15*x9[t] v16 = k16*x15[t]*x22[t] - kr16*x23[t] v17 = k17*x23[t]*x24[t] - kr17*x25[t] v18 = k18*x25[t]*x26[t] - kr18*x27[t] v19 = k19*x27[t] - kr19*x25[t]*x28[t] v2 = k2*x3[t]^2 - kr2*x4[t] v20 = -(kr20*x29[t]) + k20*x25[t]*x43[t] v21 = -(kr21*x25[t]*x26[t]) + k21*x29[t] v22 = k22*x15[t]*x31[t] - kr22*x32[t] v23 = k23*x32[t] - kr23*x33[t] v24 = k24*x22[t]*x33[t] - kr24*x34[t] v25 = k25*x24[t]*x34[t] - kr25*x35[t] v26 = k18*x26[t]*x35[t] - kr18*x36[t] v27 = -(kr19*x28[t]*x35[t]) + k19*x36[t] v28 = k28*x28[t]*x41[t] - kr28*x42[t] v29 = k29*x42[t] - kr29*x43[t]*x45[t] v3 = k3*x4[t] - kr3*x5[t] v30 = -(kr20*x37[t]) + k20*x35[t]*x43[t] v31 = -(kr21*x26[t]*x35[t]) + k21*x37[t] v32 = k32*x35[t] - kr32*x15[t]*x38[t] v33 = k33*x38[t] - kr33*x30[t]*x40[t] v34 = k34*x25[t] - kr34*x15[t]*x30[t] v35 = -(kr35*x22[t]*x24[t]) + k35*x30[t] v36 = (Vm36*x40[t])/(Km36 + x40[t]) v37 = k37*x33[t] - kr37*x15[t]*x40[t] v38 = -(kr24*x39[t]) + k24*x22[t]*x40[t] v39 = k37*x34[t] - kr37*x15[t]*x39[t] v4 = k4*x12[t]*x23[t] - kr4*x7[t] v40 = -(kr40*x38[t]) + k40*x24[t]*x39[t] v41 = k41*x30[t]*x33[t] - kr41*x35[t] v42 = k42*x44[t]*x45[t] - kr42*x46[t] v43 = k43*x46[t] v44 = k44*x45[t]*x47[t] - kr44*x48[t] v45 = k45*x48[t] v46 = k44*x45[t]*x49[t] - kr44*x50[t] v47 = k47*x50[t] v48 = -(kr48*x52[t]) + k48*x51[t]*x53[t] v49 = k49*x52[t] v5 = k5*x7[t] v50 = k50*x49[t]*x53[t] - kr50*x54[t] v51 = k49*x54[t] v52 = k52*x51[t]*x55[t] - kr52*x56[t] v53 = k53*x56[t] v54 = k52*x51[t]*x57[t] - kr52*x58[t] v55 = k55*x58[t] v56 = k56*x59[t]*x60[t] - kr56*x61[t] v57 = k57*x61[t] v58 = k58*x57[t]*x60[t] - kr58*x62[t] v59 = k59*x62[t] v6 = k6*x2[t] - kr6*x6[t] v60 = k60*x6[t] v61 = k61*x16[t] v62 = k60*x8[t] v63 = -(kr16*x18[t]) + k16*x17[t]*x22[t] v64 = -(kr17*x19[t]) + k17*x18[t]*x24[t] v65 = -(kr18*x20[t]) + k18*x19[t]*x26[t] v66 = k19*x20[t] - kr19*x19[t]*x69[t] v67 = -(kr20*x21[t]) + k20*x19[t]*x71[t] v68 = k21*x21[t] - kr21*x19[t]*x26[t] v69 = k22*x17[t]*x31[t] - kr22*x63[t] v7 = k7*x5[t] v70 = k23*x63[t] - kr23*x64[t] v71 = k24*x22[t]*x64[t] - kr24*x65[t] v72 = k25*x24[t]*x65[t] - kr25*x66[t] v73 = k18*x26[t]*x66[t] - kr18*x67[t] v74 = k19*x67[t] - kr19*x66[t]*x69[t] v75 = k28*x41[t]*x69[t] - kr28*x70[t] v76 = k29*x70[t] - kr29*x71[t]*x72[t] v77 = -(kr20*x68[t]) + k20*x66[t]*x71[t] v78 = -(kr21*x26[t]*x66[t]) + k21*x68[t] v79 = -(kr32*x17[t]*x38[t]) + k32*x66[t] v8 = -(kr8*x15[t]) + k8*x14[t]*x5[t] v80 = k34*x19[t] - kr34*x17[t]*x30[t] v81 = -(kr37*x17[t]*x40[t]) + k37*x64[t] v82 = -(kr37*x17[t]*x39[t]) + k37*x65[t] v83 = k41*x30[t]*x64[t] - kr41*x66[t] v84 = k42*x44[t]*x72[t] - kr42*x73[t] v85 = k43*x73[t] v86 = k44*x47[t]*x72[t] - kr44*x74[t] v87 = k45*x74[t] v88 = k44*x72[t]*x75[t] - kr44*x76[t] v89 = k47*x76[t] v9 = k7*x23[t] v90 = k48*x53[t]*x77[t] - kr48*x78[t] v91 = k49*x78[t] v92 = k50*x53[t]*x75[t] - kr50*x79[t] v93 = k49*x79[t] v94 = k52*x55[t]*x77[t] - kr52*x80[t] v95 = k53*x80[t] v96 = k52*x77[t]*x81[t] - kr52*x82[t] v97 = k55*x82[t] v98 = k56*x60[t]*x83[t] - kr56*x84[t] v99 = k57*x84[t] end rate equations begin parameters Km36 = 200000000000000.0 RT = 50000.0 Vm36 = 61200.0 k1 = 0.003 k10 = 3.25581 k11 = 0.001 k12 = 60.0 k13 = 130.2 k14 = 0.0001 k15 = 600000.0 k16 = 0.001 k17 = 0.001 k18 = 0.0015 k19 = 30.0 k2 = 0.001 k20 = 0.00021 k21 = 1.38 k22 = 0.0021 k23 = 360.0 k24 = 0.001 k25 = 0.001 k28 = 0.0001 k29 = 60.0 k3 = 60.0 k32 = 6.0 k33 = 12.0 k34 = 1.8 k35 = 0.09 k37 = 18.0 k4 = "1.038e-05" k40 = 0.003 k41 = 0.003 k42 = 0.0071 k43 = 60.0 k44 = 0.00111 k45 = 210.0 k47 = 174.0 k48 = 0.00143 k49 = 3.48 k50 = "2.5e-05" k52 = 0.00534 k53 = 960.0 k55 = 342.0 k56 = 0.00145 k57 = 16.2 k58 = 0.0005 k59 = 18.0 k6 = 0.003 k60 = 0.04002 k61 = 0.01002 k7 = 0.003 k8 = 0.0001 kr1 = 0.228 kr10 = 0.66 kr11 = 6.0 kr12 = 0.6 kr14 = 12.0 kr16 = 16.5 kr17 = 3.6 kr18 = 78.0 kr19 = "1e-05" kr2 = 6.0 kr20 = 24.0 kr21 = "2.2e-05" kr22 = 6.0 kr23 = 36.0 kr24 = 33.0 kr25 = 1.284 kr28 = 0.318 kr29 = "7e-05" kr3 = 0.6 kr32 = "2.4e-05" kr33 = 0.0021 kr34 = 0.00045 kr35 = 0.00045 kr37 = "9e-05" kr4 = 0.0996 kr40 = 3.84 kr41 = 2.574 kr42 = 12.0 kr44 = 1.0998 kr48 = 48.0 kr50 = 30.0 kr52 = 1.98 kr56 = 36.0 kr58 = 30.0 kr6 = 0.3 kr8 = 12.0 x1mult = 1.0 x1 = 4962.0 c1 = 1.0 c2 = 1.0 c3 = "4.3e-06" end parameters begin initial conditions x10[0] = x10i x11[0] = x11i x12[0] = x12i x13[0] = x13i x14[0] = x14i x15[0] = x15i x16[0] = x16i x17[0] = x17i x18[0] = x18i x19[0] = x19i x2[0] = x2i x20[0] = x20i x21[0] = x21i x22[0] = x22i x23[0] = x23i x24[0] = x24i x25[0] = x25i x26[0] = x26i x27[0] = x27i x28[0] = x28i x29[0] = x29i x3[0] = x3i x30[0] = x30i x31[0] = x31i x32[0] = x32i x33[0] = x33i x34[0] = x34i x35[0] = x35i x36[0] = x36i x37[0] = x37i x38[0] = x38i x39[0] = x39i x4[0] = x4i x40[0] = x40i x41[0] = x41i x42[0] = x42i x43[0] = x43i x44[0] = x44i x45[0] = x45i x46[0] = x46i x47[0] = x47i x48[0] = x48i x49[0] = x49i x5[0] = x5i x50[0] = x50i x51[0] = x51i x52[0] = x52i x53[0] = x53i x54[0] = x54i x55[0] = x55i x56[0] = x56i x57[0] = x57i x58[0] = x58i x59[0] = x59i x6[0] = x6i x60[0] = x60i x61[0] = x61i x62[0] = x62i x63[0] = x63i x64[0] = x64i x65[0] = x65i x66[0] = x66i x67[0] = x67i x68[0] = x68i x69[0] = x69i x7[0] = x7i x70[0] = x70i x71[0] = x71i x72[0] = x72i x73[0] = x73i x74[0] = x74i x75[0] = x75i x76[0] = x76i x77[0] = x77i x78[0] = x78i x79[0] = x79i x8[0] = x8i x80[0] = x80i x81[0] = x81i x82[0] = x82i x83[0] = x83i x84[0] = x84i x85[0] = x85i x86[0] = x86i x87[0] = x87i x88[0] = x88i x89[0] = x89i x9[0] = x9i x90[0] = x90i x91[0] = x91i x92[0] = x92i x93[0] = x93i x94[0] = x94i end initial conditions begin initial values x10i = 0.0 x11i = 0.0 x12i = 81000.0 x13i = 0.0 x14i = 12000.0 x15i = 0.0 x16i = 0.0 x17i = 0.0 x18i = 0.0 x19i = 0.0 x2i = 50000.0 x20i = 0.0 x21i = 0.0 x22i = 11000.0 x23i = 0.0 x24i = 26300.0 x25i = 0.0 x26i = 72000.0 x27i = 0.0 x28i = 0.0 x29i = 0.0 x3i = 0.0 x30i = 40000.0 x31i = 101000.0 x32i = 0.0 x33i = 0.0 x34i = 0.0 x35i = 0.0 x36i = 0.0 x37i = 0.0 x38i = 0.0 x39i = 0.0 x4i = 0.0 x40i = 0.0 x41i = 40000.0 x42i = 0.0 x43i = 0.0 x44i = 40000.0 x45i = 0.0 x46i = 0.0 x47i = 22000000.0 x48i = 0.0 x49i = 0.0 x5i = 0.0 x50i = 0.0 x51i = 0.0 x52i = 0.0 x53i = 40000.0 x54i = 0.0 x55i = 21000000.0 x56i = 0.0 x57i = 0.0 x58i = 0.0 x59i = 0.0 x6i = 0.0 x60i = 10000000.0 x61i = 0.0 x62i = 0.0 x63i = 0.0 x64i = 0.0 x65i = 0.0 x66i = 0.0 x67i = 0.0 x68i = 0.0 x69i = 0.0 x7i = 0.0 x70i = 0.0 x71i = 0.0 x72i = 0.0 x73i = 0.0 x74i = 0.0 x75i = 0.0 x76i = 0.0 x77i = 0.0 x78i = 0.0 x79i = 0.0 x8i = 0.0 x80i = 0.0 x81i = 0.0 x82i = 0.0 x83i = 0.0 x84i = 0.0 x85i = 0.0 x86i = 0.0 x87i = 0.0 x88i = 0.0 x89i = 0.0 x9i = 0.0 x90i = 0.0 x91i = 0.0 x92i = 0.0 x93i = 0.0 x94i = 0.0 end initial values begin assignment rules k5 := Piecewise[{{1.55, C < 3100}, {0.2, C > 100000}}, 1.55 - 0.000013500000000000001*C] C := RT/(1 + kr1/(k1*x1)) EGFEGFRact := x11[t] + x15[t] + x17[t] + x18[t] + x19[t] + x20[t] + x21[t] + x23[t] + x25[t] + x27[t] + x29[t] + x32[t] + x33[t] + x34[t] + x35[t] + x36[t] + x37[t] + x5[t] + x63[t] + x64[t] + x65[t] + x66[t] + x67[t] + x68[t] + x7[t] + x8[t] + x88[t] + x89[t] + x90[t] + x91[t] + x92[t] + x93[t] + x94[t] SHCPt := x33[t] + x34[t] + x35[t] + x36[t] + x37[t] + x38[t] + x39[t] + x40[t] + x64[t] + x65[t] + x66[t] + x67[t] + x68[t] + x91[t] + x92[t] + x93[t] + x94[t] Rafact := x45[t] + x46[t] + x48[t] + x50[t] + x72[t] + x73[t] + x74[t] + x76[t] ERKPP := x59[t] + x83[t] MEKPP := x51[t] + x77[t] RasGTP := x28[t] + x42[t] + x69[t] + x70[t] end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units