begin name sarma3 end name begin reactions reaction1 {1.0}species1 = {1.0}species2 reaction10 {1.0}species7 = {1.0}species6 reaction2 {1.0}species2 = {1.0}species1 reaction3 {1.0}species3 = {1.0}species4 reaction4 {1.0}species4 = {1.0}species5 reaction5 {1.0}species5 = {1.0}species4 reaction6 {1.0}species4 = {1.0}species3 reaction7 {1.0}species6 = {1.0}species7 reaction8 {1.0}species7 = {1.0}species8 reaction9 {1.0}species8 = {1.0}species7 end reactions begin rate equations reaction1 = compartment1*function1[species1[t], parameter1, reaction1k1, species11[t]] reaction10 = compartment1*function10[species7[t], species5[t], species4[t], species8[t], species3[t], species6[t], species10[t], parameter10, parameter13, parameter14, parameter12, parameter9, reaction10k10b] reaction2 = compartment1*function2[species2[t], species1[t], species9[t], species5[t], species4[t], species3[t], parameter11, parameter2, parameter5, parameter6, reaction2k2a] reaction3 = compartment1*function3[reaction3k3, species2[t], species3[t], parameter3, species4[t], parameter4] reaction4 = compartment1*function4[reaction4k4, species2[t], species4[t], parameter4, species3[t], parameter3] reaction5 = compartment1*function5[species5[t], species4[t], species7[t], species8[t], species9[t], species3[t], species6[t], reaction5k5a, parameter5, species1[t], species2[t], reaction5k5b, species10[t], parameter13, parameter6, parameter11, parameter2, parameter14, parameter12, parameter10, parameter9] reaction6 = compartment1*function6[species9[t], species4[t], species5[t], species7[t], species8[t], species3[t], species6[t], reaction6k6a, parameter6, species1[t], species2[t], species10[t], parameter14, parameter2, parameter11, parameter5, reaction6k6b, parameter13, parameter12, parameter10, parameter9] reaction7 = compartment1*function7[reaction7k7, species5[t], species6[t], parameter7, species7[t], parameter8] reaction8 = compartment1*function8[reaction8k7, species5[t], species7[t], parameter8, species6[t], parameter7] reaction9 = compartment1*function9[species8[t], species9[t], species4[t], species7[t], species3[t], species6[t], species10[t], parameter9, parameter13, parameter14, parameter12, parameter10, reaction9k9b] end rate equations begin parameters parameter1 = 100.0 parameter10 = 108.6 parameter11 = "3e+51" parameter12 = "3e+51" parameter13 = 24.3 parameter14 = 108.6 parameter2 = 54.3 parameter3 = 50.5 parameter4 = 500.0 parameter5 = 24.3 parameter6 = 108.6 parameter7 = 50.5 parameter8 = 500.0 parameter9 = 24.3 reaction1k1 = 1.0 reaction2k2a = 0.086 reaction3k3 = 0.01 reaction4k4 = 15.0 reaction5k5a = 0.092 reaction5k5b = 0.092 reaction6k6a = 0.086 reaction6k6b = 0.086 reaction7k7 = 0.01 reaction8k7 = 15.0 reaction9k9b = 0.092 reaction10k10b = 0.086 compartment1 = 1.0 compartment2 = 1.0 end parameters begin initial conditions species1[0] = species1i species10[0] = species10i species11[0] = species11i species2[0] = species2i species3[0] = species3i species4[0] = species4i species5[0] = species5i species6[0] = species6i species7[0] = species7i species8[0] = species8i species9[0] = species9i end initial conditions begin initial values species1i = 300.0 species10i = 200.0 species11i = 20.0 species2i = 0.0 species3i = 1199.99994221325 species4i = 0.0 species5i = 0.0 species6i = 1199.99994221325 species7i = 0.0 species8i = 0.0 species9i = 100.0 end initial values begin assignment rules end assignment rules begin function definitions function10[MKP_,MKKPP_,MKKP_,MKPP_,MKK_,MK_,P2_,K10b_,K5b_,K6b_,Kse2_,K9b_,k10b_] := (k10b*MKP*P2)/(K10b*(1 + MK/Kse2 + MKK/Kse2 + MKKP/K6b + MKKPP/K5b + MKP/K10b + MKPP/K9b)) function8[k7_,MKKPP_,MKP_,K8_,MK_,K7_] := (k7*MKKPP*MKP)/(K8*(1 + MK/K7 + MKP/K8)) function9[MKPP_,MKKPP_,MKKP_,MKP_,MKK_,MK_,P2_,K9b_,K5b_,K6b_,Kse2_,K10b_,k9b_] := (k9b*MKPP*P2)/(K9b*(1 + MK/Kse2 + MKK/Kse2 + MKKP/K6b + MKKPP/K5b + MKP/K10b + MKPP/K9b)) function7[k7_,MKKPP_,MK_,K7_,MKP_,K8_] := (k7*MK*MKKPP)/(K7*(1 + MK/K7 + MKP/K8)) function5[MKKPP_,MKKP_,MKP_,MKPP_,P1_,MKK_,MK_,k5a_,K5a_,MKKK_,MKKKP_,k5b_,P2_,K5b_,K6a_,Kse1_,K2a_,K6b_,Kse2_,K10b_,K9b_] := (k5a*MKKPP*P1)/(K5a*(1 + MKK/Kse1 + MKKK/Kse1 + MKKKP/K2a + MKKP/K6a + MKKPP/K5a)) + (k5b*MKKPP*P2)/(K5b*(1 + MK/Kse2 + MKK/Kse2 + MKKP/K6b + MKKPP/K5b + MKP/K10b + MKPP/K9b)) function4[k4_,MKKKP_,MKKP_,K4_,MKK_,K3_] := (k4*MKKKP*MKKP)/(K4*(1 + MKK/K3 + MKKP/K4)) function1[MKKK_,K1_,k1_,Sig_] := (k1*MKKK*Sig)/(K1 + MKKK) function6[P1_,MKKP_,MKKPP_,MKP_,MKPP_,MKK_,MK_,k6a_,K6a_,MKKK_,MKKKP_,P2_,K6b_,K2a_,Kse1_,K5a_,k6b_,K5b_,Kse2_,K10b_,K9b_] := (k6a*MKKP*P1)/(K6a*(1 + MKK/Kse1 + MKKK/Kse1 + MKKKP/K2a + MKKP/K6a + MKKPP/K5a)) + (k6b*MKKP*P2)/(K6b*(1 + MK/Kse2 + MKK/Kse2 + MKKP/K6b + MKKPP/K5b + MKP/K10b + MKPP/K9b)) function3[k3_,MKKKP_,MKK_,K3_,MKKP_,K4_] := (k3*MKK*MKKKP)/(K3*(1 + MKK/K3 + MKKP/K4)) function2[MKKKP_,MKKK_,P1_,MKKPP_,MKKP_,MKK_,Kse1_,K2a_,K5a_,K6a_,k2a_] := (k2a*MKKKP*P1)/(K2a*(1 + MKK/Kse1 + MKKK/Kse1 + MKKKP/K2a + MKKP/K6a + MKKPP/K5a)) end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units