(* Generated by JWS Online *)

(* This is an experimental feature of JWS Online. Please report any mistakes.*)

(* Note that the following notable SBML entities or features are not supported in notebook outputyet: *)
    (* Events *)
    (* Constraints *)
    (* Units and UnitDefinitions *)
    (* AlgebraicRules *)
    (* conversionFactors *)

variables = {
species\[LetterSpace]1[t], species\[LetterSpace]10[t], species\[LetterSpace]11[t], species\[LetterSpace]12[t], species\[LetterSpace]13[t], species\[LetterSpace]14[t], species\[LetterSpace]15[t], species\[LetterSpace]16[t], species\[LetterSpace]17[t], species\[LetterSpace]18[t], species\[LetterSpace]19[t], species\[LetterSpace]2[t], species\[LetterSpace]20[t], species\[LetterSpace]21[t], species\[LetterSpace]22[t], species\[LetterSpace]23[t], species\[LetterSpace]24[t], species\[LetterSpace]25[t], species\[LetterSpace]26[t], species\[LetterSpace]27[t], species\[LetterSpace]3[t], species\[LetterSpace]4[t], species\[LetterSpace]5[t], species\[LetterSpace]6[t], species\[LetterSpace]7[t], species\[LetterSpace]8[t], species\[LetterSpace]9[t]
};

initialValues = {
species\[LetterSpace]1[0] == 1200.0, species\[LetterSpace]10[0] == 0.0, species\[LetterSpace]11[0] == 0.0, species\[LetterSpace]12[0] == 0.0, species\[LetterSpace]13[0] == 200.0, species\[LetterSpace]14[0] == 0.0, species\[LetterSpace]15[0] == 0.0, species\[LetterSpace]16[0] == 300.0, species\[LetterSpace]17[0] == 0.0, species\[LetterSpace]18[0] == 10.0, species\[LetterSpace]19[0] == 0.0, species\[LetterSpace]2[0] == 0.0, species\[LetterSpace]20[0] == 100.0, species\[LetterSpace]21[0] == 0.0, species\[LetterSpace]22[0] == 0.0, species\[LetterSpace]23[0] == 0.0, species\[LetterSpace]24[0] == 0.0, species\[LetterSpace]25[0] == 0.0, species\[LetterSpace]26[0] == 0.0, species\[LetterSpace]27[0] == 0.0, species\[LetterSpace]3[0] == 0.0, species\[LetterSpace]4[0] == 0.0, species\[LetterSpace]5[0] == 0.0, species\[LetterSpace]6[0] == 0.0, species\[LetterSpace]7[0] == 1200.0, species\[LetterSpace]8[0] == 0.0, species\[LetterSpace]9[0] == 0.0
};

rates = {
reaction\[LetterSpace]1, reaction\[LetterSpace]10, reaction\[LetterSpace]11, reaction\[LetterSpace]12, reaction\[LetterSpace]13, reaction\[LetterSpace]14, reaction\[LetterSpace]15, reaction\[LetterSpace]16, reaction\[LetterSpace]17, reaction\[LetterSpace]18, reaction\[LetterSpace]19, reaction\[LetterSpace]2, reaction\[LetterSpace]20, reaction\[LetterSpace]21, reaction\[LetterSpace]22, reaction\[LetterSpace]23, reaction\[LetterSpace]24, reaction\[LetterSpace]25, reaction\[LetterSpace]26, reaction\[LetterSpace]27, reaction\[LetterSpace]28, reaction\[LetterSpace]3, reaction\[LetterSpace]4, reaction\[LetterSpace]5, reaction\[LetterSpace]6, reaction\[LetterSpace]7, reaction\[LetterSpace]8, reaction\[LetterSpace]9
};

rateEquations = {
reaction\[LetterSpace]1 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]1\[LetterSpace]k1*species\[LetterSpace]1[t]*species\[LetterSpace]2[t] - reaction\[LetterSpace]1\[LetterSpace]k2*species\[LetterSpace]3[t]), reaction\[LetterSpace]10 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]10\[LetterSpace]k1*species\[LetterSpace]7[t]*species\[LetterSpace]8[t] - reaction\[LetterSpace]10\[LetterSpace]k2*species\[LetterSpace]9[t]), reaction\[LetterSpace]11 -> compartment\[LetterSpace]1*reaction\[LetterSpace]11\[LetterSpace]k1*species\[LetterSpace]9[t], reaction\[LetterSpace]12 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]12\[LetterSpace]k2*species\[LetterSpace]11[t]) + reaction\[LetterSpace]12\[LetterSpace]k1*species\[LetterSpace]10[t]*species\[LetterSpace]8[t]), reaction\[LetterSpace]13 -> compartment\[LetterSpace]1*reaction\[LetterSpace]13\[LetterSpace]k1*species\[LetterSpace]11[t], reaction\[LetterSpace]14 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]14\[LetterSpace]k2*species\[LetterSpace]12[t]) + reaction\[LetterSpace]14\[LetterSpace]k1*species\[LetterSpace]13[t]*species\[LetterSpace]2[t]), reaction\[LetterSpace]15 -> compartment\[LetterSpace]1*reaction\[LetterSpace]15\[LetterSpace]k1*species\[LetterSpace]12[t], reaction\[LetterSpace]16 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]16\[LetterSpace]k1*species\[LetterSpace]10[t]*species\[LetterSpace]13[t] - reaction\[LetterSpace]16\[LetterSpace]k2*species\[LetterSpace]14[t]), reaction\[LetterSpace]17 -> compartment\[LetterSpace]1*reaction\[LetterSpace]17\[LetterSpace]k1*species\[LetterSpace]14[t], reaction\[LetterSpace]18 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]18\[LetterSpace]k1*species\[LetterSpace]15[t] - reaction\[LetterSpace]18\[LetterSpace]k2*species\[LetterSpace]13[t]*species\[LetterSpace]7[t]), reaction\[LetterSpace]19 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]19\[LetterSpace]k2*species\[LetterSpace]17[t]) + reaction\[LetterSpace]19\[LetterSpace]k1*species\[LetterSpace]16[t]*species\[LetterSpace]18[t]), reaction\[LetterSpace]2 -> compartment\[LetterSpace]1*reaction\[LetterSpace]2\[LetterSpace]k1*species\[LetterSpace]3[t], reaction\[LetterSpace]20 -> compartment\[LetterSpace]1*reaction\[LetterSpace]20\[LetterSpace]k1*species\[LetterSpace]17[t], reaction\[LetterSpace]21 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]21\[LetterSpace]k2*species\[LetterSpace]19[t]) + reaction\[LetterSpace]21\[LetterSpace]k1*species\[LetterSpace]20[t]*species\[LetterSpace]8[t]), reaction\[LetterSpace]22 -> compartment\[LetterSpace]1*reaction\[LetterSpace]22\[LetterSpace]k1*species\[LetterSpace]19[t], reaction\[LetterSpace]23 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]23\[LetterSpace]k1*species\[LetterSpace]2[t]*species\[LetterSpace]20[t] - reaction\[LetterSpace]23\[LetterSpace]k2*species\[LetterSpace]24[t]), reaction\[LetterSpace]24 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]24\[LetterSpace]k2*species\[LetterSpace]16[t]*species\[LetterSpace]20[t]) + reaction\[LetterSpace]24\[LetterSpace]k1*species\[LetterSpace]27[t]), reaction\[LetterSpace]25 -> compartment\[LetterSpace]1*reaction\[LetterSpace]25\[LetterSpace]k1*species\[LetterSpace]24[t], reaction\[LetterSpace]26 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]26\[LetterSpace]k1*species\[LetterSpace]10[t]*species\[LetterSpace]20[t] - reaction\[LetterSpace]26\[LetterSpace]k2*species\[LetterSpace]25[t]), reaction\[LetterSpace]27 -> compartment\[LetterSpace]1*reaction\[LetterSpace]27\[LetterSpace]k1*species\[LetterSpace]25[t], reaction\[LetterSpace]28 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]28\[LetterSpace]k1*species\[LetterSpace]26[t] - reaction\[LetterSpace]28\[LetterSpace]k2*species\[LetterSpace]20[t]*species\[LetterSpace]7[t]), reaction\[LetterSpace]3 -> compartment\[LetterSpace]1*(reaction\[LetterSpace]3\[LetterSpace]k1*species\[LetterSpace]2[t]*species\[LetterSpace]4[t] - reaction\[LetterSpace]3\[LetterSpace]k2*species\[LetterSpace]5[t]), reaction\[LetterSpace]4 -> compartment\[LetterSpace]1*reaction\[LetterSpace]4\[LetterSpace]k1*species\[LetterSpace]5[t], reaction\[LetterSpace]5 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]5\[LetterSpace]k2*species\[LetterSpace]21[t]) + reaction\[LetterSpace]5\[LetterSpace]k1*species\[LetterSpace]13[t]*species\[LetterSpace]6[t]), reaction\[LetterSpace]6 -> compartment\[LetterSpace]1*reaction\[LetterSpace]6\[LetterSpace]k1*species\[LetterSpace]21[t], reaction\[LetterSpace]7 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]7\[LetterSpace]k2*species\[LetterSpace]22[t]) + reaction\[LetterSpace]7\[LetterSpace]k1*species\[LetterSpace]13[t]*species\[LetterSpace]4[t]), reaction\[LetterSpace]8 -> compartment\[LetterSpace]1*reaction\[LetterSpace]8\[LetterSpace]k1*species\[LetterSpace]22[t], reaction\[LetterSpace]9 -> compartment\[LetterSpace]1*(-(reaction\[LetterSpace]9\[LetterSpace]k2*species\[LetterSpace]1[t]*species\[LetterSpace]13[t]) + reaction\[LetterSpace]9\[LetterSpace]k1*species\[LetterSpace]23[t])
};

parameters = {
parameter\[LetterSpace]1 -> 0.0, reaction\[LetterSpace]27\[LetterSpace]k1 -> 0.5, reaction\[LetterSpace]28\[LetterSpace]k1 -> 0.086, reaction\[LetterSpace]28\[LetterSpace]k2 -> 0.005, reaction\[LetterSpace]24\[LetterSpace]k1 -> 0.086, reaction\[LetterSpace]24\[LetterSpace]k2 -> 0.005, reaction\[LetterSpace]1\[LetterSpace]k1 -> 0.02, reaction\[LetterSpace]1\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]2\[LetterSpace]k1 -> 0.01, reaction\[LetterSpace]3\[LetterSpace]k1 -> 0.032, reaction\[LetterSpace]3\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]4\[LetterSpace]k1 -> 15.0, reaction\[LetterSpace]5\[LetterSpace]k1 -> 0.045, reaction\[LetterSpace]5\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]6\[LetterSpace]k1 -> 0.092, reaction\[LetterSpace]7\[LetterSpace]k1 -> 0.01, reaction\[LetterSpace]7\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]8\[LetterSpace]k1 -> 0.5, reaction\[LetterSpace]9\[LetterSpace]k1 -> 0.086, reaction\[LetterSpace]9\[LetterSpace]k2 -> 0.005, reaction\[LetterSpace]10\[LetterSpace]k1 -> 0.02, reaction\[LetterSpace]10\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]11\[LetterSpace]k1 -> 0.01, reaction\[LetterSpace]12\[LetterSpace]k1 -> 0.032, reaction\[LetterSpace]12\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]13\[LetterSpace]k1 -> 15.0, reaction\[LetterSpace]14\[LetterSpace]k1 -> 0.045, reaction\[LetterSpace]14\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]15\[LetterSpace]k1 -> 0.092, reaction\[LetterSpace]16\[LetterSpace]k1 -> 0.01, reaction\[LetterSpace]16\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]17\[LetterSpace]k1 -> 0.5, reaction\[LetterSpace]18\[LetterSpace]k1 -> 0.086, reaction\[LetterSpace]18\[LetterSpace]k2 -> 0.005, reaction\[LetterSpace]19\[LetterSpace]k1 -> 0.02, reaction\[LetterSpace]19\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]20\[LetterSpace]k1 -> 1.0, reaction\[LetterSpace]21\[LetterSpace]k1 -> 0.02, reaction\[LetterSpace]21\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]22\[LetterSpace]k1 -> 0.5, reaction\[LetterSpace]23\[LetterSpace]k1 -> 0.045, reaction\[LetterSpace]23\[LetterSpace]k2 -> 1.0, reaction\[LetterSpace]25\[LetterSpace]k1 -> 0.092, reaction\[LetterSpace]26\[LetterSpace]k1 -> 0.01, reaction\[LetterSpace]26\[LetterSpace]k2 -> 1.0, compartment\[LetterSpace]1 -> 1.0
};

assignments = {

};

events = {

};

speciesAnnotations = {

};

reactionAnnotations = {

};

units = {
{"time" -> "", "metabolite" -> "", "extent" -> ""}
};

(* Time evolution *)
odes = {
species\[LetterSpace]1'[t] == 1.0*reaction\[LetterSpace]9 -1.0*reaction\[LetterSpace]1, species\[LetterSpace]10'[t] == 1.0*reaction\[LetterSpace]11 +1.0*reaction\[LetterSpace]15 +1.0*reaction\[LetterSpace]25 -1.0*reaction\[LetterSpace]12 -1.0*reaction\[LetterSpace]16 -1.0*reaction\[LetterSpace]26, species\[LetterSpace]11'[t] == 1.0*reaction\[LetterSpace]12 -1.0*reaction\[LetterSpace]13, species\[LetterSpace]12'[t] == 1.0*reaction\[LetterSpace]14 -1.0*reaction\[LetterSpace]15, species\[LetterSpace]13'[t] == 1.0*reaction\[LetterSpace]6 +1.0*reaction\[LetterSpace]9 +1.0*reaction\[LetterSpace]15 +1.0*reaction\[LetterSpace]18 -1.0*reaction\[LetterSpace]5 -1.0*reaction\[LetterSpace]7 -1.0*reaction\[LetterSpace]14 -1.0*reaction\[LetterSpace]16, species\[LetterSpace]14'[t] == 1.0*reaction\[LetterSpace]16 -1.0*reaction\[LetterSpace]17, species\[LetterSpace]15'[t] == 1.0*reaction\[LetterSpace]17 -1.0*reaction\[LetterSpace]18, species\[LetterSpace]16'[t] == 1.0*reaction\[LetterSpace]24 -1.0*reaction\[LetterSpace]19, species\[LetterSpace]17'[t] == 1.0*reaction\[LetterSpace]19 -1.0*reaction\[LetterSpace]20, species\[LetterSpace]18'[t] == 1.0*reaction\[LetterSpace]20 -1.0*reaction\[LetterSpace]19, species\[LetterSpace]19'[t] == 1.0*reaction\[LetterSpace]21 -1.0*reaction\[LetterSpace]22, species\[LetterSpace]2'[t] == 1.0*reaction\[LetterSpace]2 +1.0*reaction\[LetterSpace]4 +1.0*reaction\[LetterSpace]13 -1.0*reaction\[LetterSpace]1 -1.0*reaction\[LetterSpace]3 -1.0*reaction\[LetterSpace]14 -1.0*reaction\[LetterSpace]23, species\[LetterSpace]20'[t] == 1.0*reaction\[LetterSpace]25 +1.0*reaction\[LetterSpace]28 +1.0*reaction\[LetterSpace]24 -1.0*reaction\[LetterSpace]21 -1.0*reaction\[LetterSpace]23 -1.0*reaction\[LetterSpace]26, species\[LetterSpace]21'[t] == 1.0*reaction\[LetterSpace]5 -1.0*reaction\[LetterSpace]6, species\[LetterSpace]22'[t] == 1.0*reaction\[LetterSpace]7 -1.0*reaction\[LetterSpace]8, species\[LetterSpace]23'[t] == 1.0*reaction\[LetterSpace]8 -1.0*reaction\[LetterSpace]9, species\[LetterSpace]24'[t] == 1.0*reaction\[LetterSpace]23 -1.0*reaction\[LetterSpace]25, species\[LetterSpace]25'[t] == 1.0*reaction\[LetterSpace]26 -1.0*reaction\[LetterSpace]27, species\[LetterSpace]26'[t] == 1.0*reaction\[LetterSpace]27 -1.0*reaction\[LetterSpace]28, species\[LetterSpace]27'[t] == 1.0*reaction\[LetterSpace]22 -1.0*reaction\[LetterSpace]24, species\[LetterSpace]3'[t] == 1.0*reaction\[LetterSpace]1 -1.0*reaction\[LetterSpace]2, species\[LetterSpace]4'[t] == 1.0*reaction\[LetterSpace]2 +1.0*reaction\[LetterSpace]6 -1.0*reaction\[LetterSpace]3 -1.0*reaction\[LetterSpace]7, species\[LetterSpace]5'[t] == 1.0*reaction\[LetterSpace]3 -1.0*reaction\[LetterSpace]4, species\[LetterSpace]6'[t] == 1.0*reaction\[LetterSpace]4 -1.0*reaction\[LetterSpace]5, species\[LetterSpace]7'[t] == 1.0*reaction\[LetterSpace]18 +1.0*reaction\[LetterSpace]28 -1.0*reaction\[LetterSpace]10, species\[LetterSpace]8'[t] == 1.0*reaction\[LetterSpace]11 +1.0*reaction\[LetterSpace]13 +1.0*reaction\[LetterSpace]20 -1.0*reaction\[LetterSpace]10 -1.0*reaction\[LetterSpace]12 -1.0*reaction\[LetterSpace]21, species\[LetterSpace]9'[t] == 1.0*reaction\[LetterSpace]10 -1.0*reaction\[LetterSpace]11
};
timeCourse = NDSolve[Join[odes, initialValues]//.rateEquations//.assignments//.parameters, variables, {t, 0, 100}];

(* Steady-state solution initialized with result of time evolution *)
findRootEquations = odes /.D[_[t],t]->0;
findRootVariables = Partition[Flatten[{#, #/.timeCourse/.t->100} &/@variables],2];
steadyStateVariables = FindRoot[findRootEquations//.rateEquations//.assignments//.parameters, findRootVariables, MaxIterations->100]
fluxes = #//.assignments//.parameters/.steadyStateVariables&/@rateEquations

(* Plot the time evolution of the variables *)
plotTable=Table[Plot[variables[[i]]/.parameters/.timeCourse,{t,0,100},PlotLegends->variables[[i]],PlotRange->Full],{i,Length[variables]}]