(* Generated by JWS Online *) (* This is an experimental feature of JWS Online. Please report any mistakes.*) (* Note that the following notable SBML entities or features are not supported in notebook outputyet: *) (* Events *) (* Constraints *) (* Units and UnitDefinitions *) (* AlgebraicRules *) (* conversionFactors *) variables = { s118[t], s119[t], s120[t], s122[t], s126[t], s135[t], s138[t], s139[t], s140[t], species\[LetterSpace]10[t], species\[LetterSpace]100[t], species\[LetterSpace]101[t], species\[LetterSpace]102[t], species\[LetterSpace]103[t], species\[LetterSpace]104[t], species\[LetterSpace]105[t], species\[LetterSpace]106[t], species\[LetterSpace]107[t], species\[LetterSpace]108[t], species\[LetterSpace]11[t], species\[LetterSpace]12[t], species\[LetterSpace]13[t], species\[LetterSpace]14[t], species\[LetterSpace]15[t], species\[LetterSpace]16[t], species\[LetterSpace]18[t], species\[LetterSpace]19[t], species\[LetterSpace]20[t], species\[LetterSpace]21[t], species\[LetterSpace]22[t], species\[LetterSpace]23[t], species\[LetterSpace]24[t], species\[LetterSpace]25[t], species\[LetterSpace]26[t], species\[LetterSpace]27[t], species\[LetterSpace]28[t], species\[LetterSpace]29[t], species\[LetterSpace]3[t], species\[LetterSpace]30[t], species\[LetterSpace]31[t], species\[LetterSpace]32[t], species\[LetterSpace]33[t], species\[LetterSpace]34[t], species\[LetterSpace]35[t], species\[LetterSpace]36[t], species\[LetterSpace]37[t], species\[LetterSpace]38[t], species\[LetterSpace]39[t], species\[LetterSpace]40[t], species\[LetterSpace]41[t], species\[LetterSpace]42[t], species\[LetterSpace]43[t], species\[LetterSpace]44[t], species\[LetterSpace]45[t], species\[LetterSpace]46[t], species\[LetterSpace]47[t], species\[LetterSpace]48[t], species\[LetterSpace]49[t], species\[LetterSpace]5[t], species\[LetterSpace]50[t], species\[LetterSpace]51[t], species\[LetterSpace]52[t], species\[LetterSpace]53[t], species\[LetterSpace]54[t], species\[LetterSpace]55[t], species\[LetterSpace]56[t], species\[LetterSpace]57[t], species\[LetterSpace]58[t], species\[LetterSpace]59[t], species\[LetterSpace]6[t], species\[LetterSpace]60[t], species\[LetterSpace]61[t], species\[LetterSpace]62[t], species\[LetterSpace]63[t], species\[LetterSpace]64[t], species\[LetterSpace]65[t], species\[LetterSpace]66[t], species\[LetterSpace]7[t], species\[LetterSpace]74[t], species\[LetterSpace]75[t], species\[LetterSpace]76[t], species\[LetterSpace]78[t], species\[LetterSpace]8[t], species\[LetterSpace]80[t], species\[LetterSpace]81[t], species\[LetterSpace]82[t], species\[LetterSpace]83[t], species\[LetterSpace]84[t], species\[LetterSpace]85[t], species\[LetterSpace]86[t], species\[LetterSpace]87[t], species\[LetterSpace]88[t], species\[LetterSpace]9[t], species\[LetterSpace]90[t], species\[LetterSpace]91[t], species\[LetterSpace]92[t], species\[LetterSpace]94[t], species\[LetterSpace]95[t], species\[LetterSpace]96[t], species\[LetterSpace]97[t], species\[LetterSpace]98[t], species\[LetterSpace]99[t] }; initialValues = { s118[0] == 0.0, s119[0] == 0.0, s120[0] == 0.0, s122[0] == 0.0, s126[0] == 0.0, s135[0] == 0.0, s138[0] == 0.0, s139[0] == 0.0, s140[0] == 12.0, species\[LetterSpace]10[0] == 0.0, species\[LetterSpace]100[0] == 0.0, species\[LetterSpace]101[0] == 0.0, species\[LetterSpace]102[0] == 0.0, species\[LetterSpace]103[0] == 0.0, species\[LetterSpace]104[0] == 0.0, species\[LetterSpace]105[0] == 0.0, species\[LetterSpace]106[0] == 0.0, species\[LetterSpace]107[0] == 12.0, species\[LetterSpace]108[0] == 100.0, species\[LetterSpace]11[0] == 1000.0, species\[LetterSpace]12[0] == 0.0, species\[LetterSpace]13[0] == 0.0, species\[LetterSpace]14[0] == 0.0, species\[LetterSpace]15[0] == 0.0, species\[LetterSpace]16[0] == 0.0, species\[LetterSpace]18[0] == 0.0, species\[LetterSpace]19[0] == 0.0, species\[LetterSpace]20[0] == 50.0, species\[LetterSpace]21[0] == 0.0, species\[LetterSpace]22[0] == 0.0, species\[LetterSpace]23[0] == 0.0, species\[LetterSpace]24[0] == 60.0, species\[LetterSpace]25[0] == 0.0, species\[LetterSpace]26[0] == 0.0, species\[LetterSpace]27[0] == 0.0, species\[LetterSpace]28[0] == 0.0, species\[LetterSpace]29[0] == 0.0, species\[LetterSpace]3[0] == 0.0, species\[LetterSpace]30[0] == 0.0, species\[LetterSpace]31[0] == 0.0, species\[LetterSpace]32[0] == 85.0, species\[LetterSpace]33[0] == 0.0, species\[LetterSpace]34[0] == 0.0, species\[LetterSpace]35[0] == 34.0, species\[LetterSpace]36[0] == 0.0, species\[LetterSpace]37[0] == 0.0, species\[LetterSpace]38[0] == 19000.0, species\[LetterSpace]39[0] == 0.0, species\[LetterSpace]40[0] == 0.0, species\[LetterSpace]41[0] == 67.0, species\[LetterSpace]42[0] == 0.0, species\[LetterSpace]43[0] == 0.0, species\[LetterSpace]44[0] == 0.0, species\[LetterSpace]45[0] == 0.0, species\[LetterSpace]46[0] == 0.0, species\[LetterSpace]47[0] == 0.0, species\[LetterSpace]48[0] == 0.0, species\[LetterSpace]49[0] == 67.0, species\[LetterSpace]5[0] == 12.0, species\[LetterSpace]50[0] == 0.0, species\[LetterSpace]51[0] == 41667.0, species\[LetterSpace]52[0] == 0.0, species\[LetterSpace]53[0] == 0.0, species\[LetterSpace]54[0] == 0.0, species\[LetterSpace]55[0] == 0.0, species\[LetterSpace]56[0] == 0.0, species\[LetterSpace]57[0] == 67.0, species\[LetterSpace]58[0] == 0.0, species\[LetterSpace]59[0] == 35000.0, species\[LetterSpace]6[0] == 0.0, species\[LetterSpace]60[0] == 0.0, species\[LetterSpace]61[0] == 0.0, species\[LetterSpace]62[0] == 0.0, species\[LetterSpace]63[0] == 0.0, species\[LetterSpace]64[0] == 16667.0, species\[LetterSpace]65[0] == 0.0, species\[LetterSpace]66[0] == 0.0, species\[LetterSpace]7[0] == 0.0, species\[LetterSpace]74[0] == 40493.0, species\[LetterSpace]75[0] == 0.0, species\[LetterSpace]76[0] == 0.0, species\[LetterSpace]78[0] == 0.0, species\[LetterSpace]8[0] == 0.0, species\[LetterSpace]80[0] == 0.0, species\[LetterSpace]81[0] == 0.0, species\[LetterSpace]82[0] == 0.0, species\[LetterSpace]83[0] == 0.0, species\[LetterSpace]84[0] == 1000.0, species\[LetterSpace]85[0] == 0.0, species\[LetterSpace]86[0] == 0.0, species\[LetterSpace]87[0] == 0.0, species\[LetterSpace]88[0] == 0.0, species\[LetterSpace]9[0] == 0.0, species\[LetterSpace]90[0] == 0.0, species\[LetterSpace]91[0] == 0.0, species\[LetterSpace]92[0] == 0.0, species\[LetterSpace]94[0] == 0.0, species\[LetterSpace]95[0] == 0.0, species\[LetterSpace]96[0] == 0.0, species\[LetterSpace]97[0] == 0.0, species\[LetterSpace]98[0] == 0.0, species\[LetterSpace]99[0] == 0.0 }; rates = { re112, re113, re114, re115, re116, re117, re121, re126, re135, re136, re137, re138, re140, re141, re142, re143, re144, re145, re147, re148, re153, re157, re158, re159, re160, re161, re162, re163, re164, reaction\[LetterSpace]1, reaction\[LetterSpace]100, reaction\[LetterSpace]103, reaction\[LetterSpace]106, reaction\[LetterSpace]107, reaction\[LetterSpace]108, reaction\[LetterSpace]109, reaction\[LetterSpace]110, reaction\[LetterSpace]12, reaction\[LetterSpace]13, reaction\[LetterSpace]14, reaction\[LetterSpace]15, reaction\[LetterSpace]16, reaction\[LetterSpace]17, reaction\[LetterSpace]18, reaction\[LetterSpace]19, reaction\[LetterSpace]20, reaction\[LetterSpace]21, reaction\[LetterSpace]22, reaction\[LetterSpace]23, reaction\[LetterSpace]24, reaction\[LetterSpace]25, reaction\[LetterSpace]26, reaction\[LetterSpace]27, reaction\[LetterSpace]28, reaction\[LetterSpace]29, reaction\[LetterSpace]3, reaction\[LetterSpace]30, reaction\[LetterSpace]31, reaction\[LetterSpace]32, reaction\[LetterSpace]33, reaction\[LetterSpace]34, reaction\[LetterSpace]35, reaction\[LetterSpace]36, reaction\[LetterSpace]37, reaction\[LetterSpace]38, reaction\[LetterSpace]39, reaction\[LetterSpace]4, reaction\[LetterSpace]40, reaction\[LetterSpace]42, reaction\[LetterSpace]43, reaction\[LetterSpace]44, reaction\[LetterSpace]45, reaction\[LetterSpace]46, reaction\[LetterSpace]47, reaction\[LetterSpace]48, reaction\[LetterSpace]49, reaction\[LetterSpace]5, reaction\[LetterSpace]50, reaction\[LetterSpace]51, reaction\[LetterSpace]52, reaction\[LetterSpace]53, reaction\[LetterSpace]54, reaction\[LetterSpace]55, reaction\[LetterSpace]56, reaction\[LetterSpace]57, reaction\[LetterSpace]58, reaction\[LetterSpace]59, reaction\[LetterSpace]6, reaction\[LetterSpace]60, reaction\[LetterSpace]61, reaction\[LetterSpace]62, reaction\[LetterSpace]63, reaction\[LetterSpace]64, reaction\[LetterSpace]65, reaction\[LetterSpace]66, reaction\[LetterSpace]7, reaction\[LetterSpace]73, reaction\[LetterSpace]74, reaction\[LetterSpace]75, reaction\[LetterSpace]76, reaction\[LetterSpace]79, reaction\[LetterSpace]8, reaction\[LetterSpace]80, reaction\[LetterSpace]81, reaction\[LetterSpace]82, reaction\[LetterSpace]83, reaction\[LetterSpace]84, reaction\[LetterSpace]85, reaction\[LetterSpace]86, reaction\[LetterSpace]87, reaction\[LetterSpace]9, reaction\[LetterSpace]90, reaction\[LetterSpace]91, reaction\[LetterSpace]94, reaction\[LetterSpace]95, reaction\[LetterSpace]96, reaction\[LetterSpace]97, reaction\[LetterSpace]98, reaction\[LetterSpace]99 }; rateEquations = { re112 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]222*s118[t]) + parameter\[LetterSpace]221*species\[LetterSpace]11[t]*species\[LetterSpace]82[t]), re113 -> compartment\[LetterSpace]1*parameter\[LetterSpace]223*s118[t], re114 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]225*s119[t]) + parameter\[LetterSpace]224*species\[LetterSpace]12[t]*species\[LetterSpace]82[t]), re115 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]234*s120[t]) + parameter\[LetterSpace]233*species\[LetterSpace]12[t]*species\[LetterSpace]85[t]), re116 -> c3*function\[LetterSpace]4\[LetterSpace]reaction\[LetterSpace]n7\[LetterSpace]1[parameter\[LetterSpace]231, parameter\[LetterSpace]232, species\[LetterSpace]92[t]], re117 -> compartment\[LetterSpace]1*parameter\[LetterSpace]237*s120[t], re121 -> -(parameter\[LetterSpace]236*s122[t]) + parameter\[LetterSpace]235*species\[LetterSpace]26[t]*species\[LetterSpace]95[t], re126 -> -(parameter\[LetterSpace]241*s126[t]) + parameter\[LetterSpace]240*s122[t]*species\[LetterSpace]24[t], re135 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]129*species\[LetterSpace]107[t]*species\[LetterSpace]5[t] - parameter\[LetterSpace]130*species\[LetterSpace]78[t]), re136 -> compartment\[LetterSpace]1*function\[LetterSpace]3[species\[LetterSpace]48[t], parameter\[LetterSpace]86, parameter\[LetterSpace]85], re137 -> compartment\[LetterSpace]1*parameter\[LetterSpace]31*species\[LetterSpace]16[t], re138 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]30*species\[LetterSpace]16[t]) + parameter\[LetterSpace]29*species\[LetterSpace]108[t]*species\[LetterSpace]9[t]), re140 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]146*species\[LetterSpace]20[t]*species\[LetterSpace]85[t] - parameter\[LetterSpace]147*species\[LetterSpace]90[t]), re141 -> compartment\[LetterSpace]1*parameter\[LetterSpace]148*species\[LetterSpace]90[t], re142 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]165*species\[LetterSpace]101[t]) + parameter\[LetterSpace]164*species\[LetterSpace]20[t]*species\[LetterSpace]87[t]), re143 -> compartment\[LetterSpace]1*parameter\[LetterSpace]166*species\[LetterSpace]101[t], re144 -> function\[LetterSpace]4[c2, parameter\[LetterSpace]152, parameter\[LetterSpace]153, species\[LetterSpace]24[t], species\[LetterSpace]94[t], species\[LetterSpace]95[t]], re145 -> function\[LetterSpace]5[c2, parameter\[LetterSpace]155, species\[LetterSpace]94[t]], re147 -> function\[LetterSpace]8[c2, parameter\[LetterSpace]169, parameter\[LetterSpace]170, species\[LetterSpace]102[t], species\[LetterSpace]24[t], species\[LetterSpace]92[t]], re148 -> function\[LetterSpace]9[c2, parameter\[LetterSpace]171, species\[LetterSpace]102[t]], re153 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]239*s135[t]) + parameter\[LetterSpace]238*s120[t]*species\[LetterSpace]20[t]), re157 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]227*s138[t]) + parameter\[LetterSpace]226*species\[LetterSpace]84[t]*species\[LetterSpace]9[t]), re158 -> compartment\[LetterSpace]1*parameter\[LetterSpace]228*s138[t], re159 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]230*s139[t]) + parameter\[LetterSpace]229*species\[LetterSpace]85[t]*species\[LetterSpace]9[t]), re160 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]3*species\[LetterSpace]4*s140[t] - parameter\[LetterSpace]4*species\[LetterSpace]6[t]), re161 -> compartment\[LetterSpace]1*parameter\[LetterSpace]242*s135[t], re162 -> compartment\[LetterSpace]1*parameter\[LetterSpace]243*s135[t], re163 -> parameter\[LetterSpace]244*s126[t], re164 -> parameter\[LetterSpace]245*s126[t], reaction\[LetterSpace]1 -> parameter\[LetterSpace]1*species\[LetterSpace]1*species\[LetterSpace]2 - parameter\[LetterSpace]2*species\[LetterSpace]3[t], reaction\[LetterSpace]100 -> compartment\[LetterSpace]1*parameter\[LetterSpace]163*species\[LetterSpace]99[t], reaction\[LetterSpace]103 -> c2*(-(parameter\[LetterSpace]168*species\[LetterSpace]92[t]) + parameter\[LetterSpace]167*species\[LetterSpace]95[t]^2), reaction\[LetterSpace]106 -> c2*(-(parameter\[LetterSpace]173*species\[LetterSpace]103[t]) + parameter\[LetterSpace]172*species\[LetterSpace]95[t]*species\[LetterSpace]96[t]), reaction\[LetterSpace]107 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]175*species\[LetterSpace]104[t]) + parameter\[LetterSpace]174*species\[LetterSpace]100[t]*species\[LetterSpace]84[t]), reaction\[LetterSpace]108 -> compartment\[LetterSpace]1*parameter\[LetterSpace]178*species\[LetterSpace]105[t], reaction\[LetterSpace]109 -> compartment\[LetterSpace]1*parameter\[LetterSpace]179*species\[LetterSpace]105[t], reaction\[LetterSpace]110 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]177*species\[LetterSpace]105[t]) + parameter\[LetterSpace]176*species\[LetterSpace]104[t]*species\[LetterSpace]108[t]), reaction\[LetterSpace]12 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]32*species\[LetterSpace]12[t]*species\[LetterSpace]20[t] - parameter\[LetterSpace]33*species\[LetterSpace]21[t]), reaction\[LetterSpace]13 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]35*species\[LetterSpace]14[t]*species\[LetterSpace]20[t] - parameter\[LetterSpace]36*species\[LetterSpace]22[t]), reaction\[LetterSpace]14 -> compartment\[LetterSpace]1*parameter\[LetterSpace]34*species\[LetterSpace]21[t], reaction\[LetterSpace]15 -> compartment\[LetterSpace]1*parameter\[LetterSpace]37*species\[LetterSpace]22[t], reaction\[LetterSpace]16 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]38*species\[LetterSpace]11[t]*species\[LetterSpace]12[t] - parameter\[LetterSpace]39*species\[LetterSpace]18[t]), reaction\[LetterSpace]17 -> parameter\[LetterSpace]40*species\[LetterSpace]14[t], reaction\[LetterSpace]18 -> c3*(parameter\[LetterSpace]46*species\[LetterSpace]23[t]*species\[LetterSpace]24[t] - parameter\[LetterSpace]47*species\[LetterSpace]25[t]), reaction\[LetterSpace]19 -> c3*(parameter\[LetterSpace]43*species\[LetterSpace]24[t]*species\[LetterSpace]26[t] - parameter\[LetterSpace]44*species\[LetterSpace]27[t]), reaction\[LetterSpace]20 -> c3*parameter\[LetterSpace]45*species\[LetterSpace]27[t], reaction\[LetterSpace]21 -> c3*parameter\[LetterSpace]48*species\[LetterSpace]25[t], reaction\[LetterSpace]22 -> parameter\[LetterSpace]51*species\[LetterSpace]28[t], reaction\[LetterSpace]23 -> c3*function\[LetterSpace]1[parameter\[LetterSpace]52, parameter\[LetterSpace]53, species\[LetterSpace]23[t]], reaction\[LetterSpace]24 -> parameter\[LetterSpace]54*species\[LetterSpace]30[t], reaction\[LetterSpace]25 -> compartment\[LetterSpace]1*function\[LetterSpace]2[parameter\[LetterSpace]55, species\[LetterSpace]31[t]], reaction\[LetterSpace]26 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]57*species\[LetterSpace]15[t]) + parameter\[LetterSpace]56*species\[LetterSpace]19[t]*species\[LetterSpace]9[t]), reaction\[LetterSpace]27 -> compartment\[LetterSpace]1*parameter\[LetterSpace]58*species\[LetterSpace]31[t], reaction\[LetterSpace]28 -> compartment\[LetterSpace]1*parameter\[LetterSpace]59*species\[LetterSpace]19[t], reaction\[LetterSpace]29 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]63*species\[LetterSpace]32[t]*species\[LetterSpace]33[t] - parameter\[LetterSpace]64*species\[LetterSpace]34[t]), reaction\[LetterSpace]3 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]5*species\[LetterSpace]3[t]*species\[LetterSpace]6[t] - parameter\[LetterSpace]6*species\[LetterSpace]7[t]), reaction\[LetterSpace]30 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]65*species\[LetterSpace]34[t]*species\[LetterSpace]35[t] - parameter\[LetterSpace]66*species\[LetterSpace]37[t]), reaction\[LetterSpace]31 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]67*species\[LetterSpace]37[t]*species\[LetterSpace]38[t] - parameter\[LetterSpace]68*species\[LetterSpace]39[t]), reaction\[LetterSpace]32 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]69*species\[LetterSpace]39[t] - parameter\[LetterSpace]70*species\[LetterSpace]37[t]*species\[LetterSpace]40[t]), reaction\[LetterSpace]33 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]71*species\[LetterSpace]40[t]*species\[LetterSpace]41[t] - parameter\[LetterSpace]72*species\[LetterSpace]42[t]), reaction\[LetterSpace]34 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]73*species\[LetterSpace]42[t] - parameter\[LetterSpace]74*species\[LetterSpace]43[t]*species\[LetterSpace]44[t]), reaction\[LetterSpace]35 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]75*species\[LetterSpace]37[t]*species\[LetterSpace]43[t] - parameter\[LetterSpace]76*species\[LetterSpace]45[t]), reaction\[LetterSpace]36 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]78*species\[LetterSpace]37[t]*species\[LetterSpace]38[t]) + parameter\[LetterSpace]77*species\[LetterSpace]45[t]), reaction\[LetterSpace]37 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]79*species\[LetterSpace]37[t] - parameter\[LetterSpace]80*species\[LetterSpace]46[t]*species\[LetterSpace]9[t]), reaction\[LetterSpace]38 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]81*species\[LetterSpace]46[t] - parameter\[LetterSpace]82*species\[LetterSpace]47[t]*species\[LetterSpace]48[t]), reaction\[LetterSpace]39 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]61*species\[LetterSpace]16[t] - parameter\[LetterSpace]62*species\[LetterSpace]33[t]), reaction\[LetterSpace]4 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]15*species\[LetterSpace]10[t]) + parameter\[LetterSpace]14*species\[LetterSpace]11[t]*species\[LetterSpace]9[t]), reaction\[LetterSpace]40 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]84*species\[LetterSpace]32[t]*species\[LetterSpace]35[t]) + parameter\[LetterSpace]83*species\[LetterSpace]47[t]), reaction\[LetterSpace]42 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]87*species\[LetterSpace]33[t] - parameter\[LetterSpace]88*species\[LetterSpace]48[t]*species\[LetterSpace]9[t]), reaction\[LetterSpace]43 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]90*species\[LetterSpace]36[t]) + parameter\[LetterSpace]89*species\[LetterSpace]32[t]*species\[LetterSpace]48[t]), reaction\[LetterSpace]44 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]91*species\[LetterSpace]34[t] - parameter\[LetterSpace]92*species\[LetterSpace]36[t]*species\[LetterSpace]9[t]), reaction\[LetterSpace]45 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]93*species\[LetterSpace]35[t]*species\[LetterSpace]36[t] - parameter\[LetterSpace]94*species\[LetterSpace]46[t]), reaction\[LetterSpace]46 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]96*species\[LetterSpace]37[t]) + parameter\[LetterSpace]95*species\[LetterSpace]33[t]*species\[LetterSpace]47[t]), reaction\[LetterSpace]47 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]97*species\[LetterSpace]44[t]*species\[LetterSpace]49[t] - parameter\[LetterSpace]98*species\[LetterSpace]50[t]), reaction\[LetterSpace]48 -> compartment\[LetterSpace]1*parameter\[LetterSpace]99*species\[LetterSpace]50[t], reaction\[LetterSpace]49 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]100*species\[LetterSpace]44[t]*species\[LetterSpace]51[t] - parameter\[LetterSpace]101*species\[LetterSpace]52[t]), reaction\[LetterSpace]5 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]11*species\[LetterSpace]7[t]^2 - parameter\[LetterSpace]12*species\[LetterSpace]8[t]), reaction\[LetterSpace]50 -> compartment\[LetterSpace]1*parameter\[LetterSpace]102*species\[LetterSpace]52[t], reaction\[LetterSpace]51 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]103*species\[LetterSpace]44[t]*species\[LetterSpace]53[t] - parameter\[LetterSpace]104*species\[LetterSpace]54[t]), reaction\[LetterSpace]52 -> compartment\[LetterSpace]1*parameter\[LetterSpace]105*species\[LetterSpace]54[t], reaction\[LetterSpace]53 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]107*species\[LetterSpace]56[t]) + parameter\[LetterSpace]106*species\[LetterSpace]55[t]*species\[LetterSpace]57[t]), reaction\[LetterSpace]54 -> compartment\[LetterSpace]1*parameter\[LetterSpace]108*species\[LetterSpace]56[t], reaction\[LetterSpace]55 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]109*species\[LetterSpace]53[t]*species\[LetterSpace]57[t] - parameter\[LetterSpace]110*species\[LetterSpace]58[t]), reaction\[LetterSpace]56 -> compartment\[LetterSpace]1*parameter\[LetterSpace]111*species\[LetterSpace]58[t], reaction\[LetterSpace]57 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]112*species\[LetterSpace]55[t]*species\[LetterSpace]59[t] - parameter\[LetterSpace]113*species\[LetterSpace]60[t]), reaction\[LetterSpace]58 -> compartment\[LetterSpace]1*parameter\[LetterSpace]114*species\[LetterSpace]60[t], reaction\[LetterSpace]59 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]115*species\[LetterSpace]55[t]*species\[LetterSpace]61[t] - parameter\[LetterSpace]116*species\[LetterSpace]62[t]), reaction\[LetterSpace]6 -> compartment\[LetterSpace]1*parameter\[LetterSpace]13*species\[LetterSpace]8[t], reaction\[LetterSpace]60 -> compartment\[LetterSpace]1*parameter\[LetterSpace]117*species\[LetterSpace]62[t], reaction\[LetterSpace]61 -> compartment\[LetterSpace]1*parameter\[LetterSpace]120*species\[LetterSpace]65[t], reaction\[LetterSpace]62 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]121*species\[LetterSpace]61[t]*species\[LetterSpace]64[t] - parameter\[LetterSpace]122*species\[LetterSpace]66[t]), reaction\[LetterSpace]63 -> compartment\[LetterSpace]1*parameter\[LetterSpace]123*species\[LetterSpace]66[t], reaction\[LetterSpace]64 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]118*species\[LetterSpace]63[t]*species\[LetterSpace]64[t] - parameter\[LetterSpace]119*species\[LetterSpace]65[t]), reaction\[LetterSpace]65 -> c3*(parameter\[LetterSpace]41*species\[LetterSpace]23[t] - parameter\[LetterSpace]42*species\[LetterSpace]26[t]^2), reaction\[LetterSpace]66 -> c3*(-(parameter\[LetterSpace]50*species\[LetterSpace]26[t]*species\[LetterSpace]28[t]) + parameter\[LetterSpace]49*species\[LetterSpace]29[t]), reaction\[LetterSpace]7 -> compartment\[LetterSpace]1*parameter\[LetterSpace]16*species\[LetterSpace]10[t], reaction\[LetterSpace]73 -> compartment\[LetterSpace]1*parameter\[LetterSpace]60*species\[LetterSpace]15[t], reaction\[LetterSpace]74 -> compartment\[LetterSpace]1*function\[LetterSpace]activation[parameter\[LetterSpace]124, species\[LetterSpace]63[t], species\[LetterSpace]74[t], parameter\[LetterSpace]125], reaction\[LetterSpace]75 -> compartment\[LetterSpace]1*parameter\[LetterSpace]126*species\[LetterSpace]75[t], reaction\[LetterSpace]76 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]127*species\[LetterSpace]75[t]^2 - parameter\[LetterSpace]128*species\[LetterSpace]76[t]), reaction\[LetterSpace]79 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]133*species\[LetterSpace]80[t]^2 - parameter\[LetterSpace]134*species\[LetterSpace]81[t]), reaction\[LetterSpace]8 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]18*species\[LetterSpace]13[t]) + parameter\[LetterSpace]17*species\[LetterSpace]12[t]*species\[LetterSpace]9[t]), reaction\[LetterSpace]80 -> parameter\[LetterSpace]131*species\[LetterSpace]79*species\[LetterSpace]78[t] - parameter\[LetterSpace]132*species\[LetterSpace]80[t], reaction\[LetterSpace]81 -> compartment\[LetterSpace]1*parameter\[LetterSpace]135*species\[LetterSpace]81[t], reaction\[LetterSpace]82 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]137*species\[LetterSpace]83[t]) + parameter\[LetterSpace]136*species\[LetterSpace]82[t]*species\[LetterSpace]84[t]), reaction\[LetterSpace]83 -> compartment\[LetterSpace]1*parameter\[LetterSpace]138*species\[LetterSpace]83[t], reaction\[LetterSpace]84 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]139*species\[LetterSpace]82[t]*species\[LetterSpace]85[t] - parameter\[LetterSpace]140*species\[LetterSpace]86[t]), reaction\[LetterSpace]85 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]141*species\[LetterSpace]85[t]^2 - parameter\[LetterSpace]142*species\[LetterSpace]87[t]), reaction\[LetterSpace]86 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]143*species\[LetterSpace]108[t]*species\[LetterSpace]82[t] - parameter\[LetterSpace]144*species\[LetterSpace]88[t]), reaction\[LetterSpace]87 -> compartment\[LetterSpace]1*parameter\[LetterSpace]145*species\[LetterSpace]88[t], reaction\[LetterSpace]9 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]27*species\[LetterSpace]12[t]^2 - parameter\[LetterSpace]28*species\[LetterSpace]14[t]), reaction\[LetterSpace]90 -> compartment\[LetterSpace]1*(parameter\[LetterSpace]149*species\[LetterSpace]84[t]*species\[LetterSpace]85[t] - parameter\[LetterSpace]150*species\[LetterSpace]91[t]), reaction\[LetterSpace]91 -> parameter\[LetterSpace]151*species\[LetterSpace]87[t], reaction\[LetterSpace]94 -> parameter\[LetterSpace]154*species\[LetterSpace]96[t], reaction\[LetterSpace]95 -> c2*function\[LetterSpace]6[parameter\[LetterSpace]156, parameter\[LetterSpace]157, species\[LetterSpace]92[t]], reaction\[LetterSpace]96 -> parameter\[LetterSpace]158*species\[LetterSpace]97[t], reaction\[LetterSpace]97 -> compartment\[LetterSpace]1*function\[LetterSpace]7[parameter\[LetterSpace]159, species\[LetterSpace]98[t]], reaction\[LetterSpace]98 -> compartment\[LetterSpace]1*(-(parameter\[LetterSpace]161*species\[LetterSpace]100[t]) + parameter\[LetterSpace]160*species\[LetterSpace]82[t]*species\[LetterSpace]99[t]), reaction\[LetterSpace]99 -> compartment\[LetterSpace]1*parameter\[LetterSpace]162*species\[LetterSpace]98[t] }; parameters = { parameter\[LetterSpace]1 -> 0.1, parameter\[LetterSpace]100 -> 0.011, parameter\[LetterSpace]101 -> 0.001833, parameter\[LetterSpace]102 -> 3.5, parameter\[LetterSpace]103 -> 0.011, parameter\[LetterSpace]104 -> 0.001833, parameter\[LetterSpace]105 -> 2.9, parameter\[LetterSpace]106 -> 0.0143, parameter\[LetterSpace]107 -> 0.8, parameter\[LetterSpace]108 -> 0.058, parameter\[LetterSpace]109 -> 0.00025, parameter\[LetterSpace]11 -> 0.04, parameter\[LetterSpace]110 -> 0.5, parameter\[LetterSpace]111 -> 0.058, parameter\[LetterSpace]112 -> 0.00011, parameter\[LetterSpace]113 -> 0.033, parameter\[LetterSpace]114 -> 16.0, parameter\[LetterSpace]115 -> 0.00011, parameter\[LetterSpace]116 -> 0.033, parameter\[LetterSpace]117 -> 6.7, parameter\[LetterSpace]118 -> 0.014, parameter\[LetterSpace]119 -> 0.6, parameter\[LetterSpace]12 -> 0.2, parameter\[LetterSpace]120 -> 0.27, parameter\[LetterSpace]121 -> 0.005, parameter\[LetterSpace]122 -> 0.5, parameter\[LetterSpace]123 -> 0.3, parameter\[LetterSpace]124 -> 0.2335, parameter\[LetterSpace]125 -> 20000.0, parameter\[LetterSpace]126 -> 0.0388, parameter\[LetterSpace]127 -> 0.9854, parameter\[LetterSpace]128 -> 0.0009, parameter\[LetterSpace]129 -> 0.1, parameter\[LetterSpace]13 -> 0.005, parameter\[LetterSpace]130 -> 0.05, parameter\[LetterSpace]131 -> 0.02, parameter\[LetterSpace]132 -> 0.02, parameter\[LetterSpace]133 -> 0.04, parameter\[LetterSpace]134 -> 0.2, parameter\[LetterSpace]135 -> 0.005, parameter\[LetterSpace]136 -> 0.008, parameter\[LetterSpace]137 -> 0.8, parameter\[LetterSpace]138 -> 0.4, parameter\[LetterSpace]139 -> 0.005, parameter\[LetterSpace]14 -> 0.008, parameter\[LetterSpace]140 -> 0.5, parameter\[LetterSpace]141 -> 0.02, parameter\[LetterSpace]142 -> 0.1, parameter\[LetterSpace]143 -> 0.001, parameter\[LetterSpace]144 -> 0.2, parameter\[LetterSpace]145 -> 0.003, parameter\[LetterSpace]146 -> 0.001, parameter\[LetterSpace]147 -> 0.2, parameter\[LetterSpace]148 -> 0.003, parameter\[LetterSpace]149 -> 2*^-07, parameter\[LetterSpace]15 -> 0.8, parameter\[LetterSpace]150 -> 0.2, parameter\[LetterSpace]151 -> 0.005, parameter\[LetterSpace]152 -> 0.001, parameter\[LetterSpace]153 -> 0.2, parameter\[LetterSpace]154 -> 0.05, parameter\[LetterSpace]155 -> 0.005, parameter\[LetterSpace]156 -> 0.01, parameter\[LetterSpace]157 -> 400.0, parameter\[LetterSpace]158 -> 0.001, parameter\[LetterSpace]159 -> 0.01, parameter\[LetterSpace]16 -> 0.4, parameter\[LetterSpace]160 -> 0.02, parameter\[LetterSpace]161 -> 0.1, parameter\[LetterSpace]162 -> 0.0005, parameter\[LetterSpace]163 -> 0.0005, parameter\[LetterSpace]164 -> 0.001, parameter\[LetterSpace]165 -> 0.2, parameter\[LetterSpace]166 -> 0.003, parameter\[LetterSpace]167 -> 0.005, parameter\[LetterSpace]168 -> 0.5, parameter\[LetterSpace]169 -> 0.001, parameter\[LetterSpace]17 -> 0.005, parameter\[LetterSpace]170 -> 0.2, parameter\[LetterSpace]171 -> 0.005, parameter\[LetterSpace]172 -> 2*^-07, parameter\[LetterSpace]173 -> 0.2, parameter\[LetterSpace]174 -> 0.008, parameter\[LetterSpace]175 -> 0.8, parameter\[LetterSpace]176 -> 0.001, parameter\[LetterSpace]177 -> 0.2, parameter\[LetterSpace]178 -> 0.003, parameter\[LetterSpace]179 -> 0.0005, parameter\[LetterSpace]18 -> 0.5, parameter\[LetterSpace]2 -> 0.05, parameter\[LetterSpace]221 -> 0.001, parameter\[LetterSpace]222 -> 7.99942179, parameter\[LetterSpace]223 -> 3.999994653, parameter\[LetterSpace]224 -> 0.000509534, parameter\[LetterSpace]225 -> 4.982769238, parameter\[LetterSpace]226 -> 0.002, parameter\[LetterSpace]227 -> 7.994572329, parameter\[LetterSpace]228 -> 3.999987265, parameter\[LetterSpace]229 -> 0.000501092, parameter\[LetterSpace]230 -> 4.992048157, parameter\[LetterSpace]231 -> 0.001, parameter\[LetterSpace]232 -> 400.0, parameter\[LetterSpace]233 -> 0.02, parameter\[LetterSpace]234 -> 0.1, parameter\[LetterSpace]235 -> 0.02, parameter\[LetterSpace]236 -> 0.1, parameter\[LetterSpace]237 -> 0.005, parameter\[LetterSpace]238 -> 0.001, parameter\[LetterSpace]239 -> 0.2, parameter\[LetterSpace]240 -> 0.001, parameter\[LetterSpace]241 -> 0.2, parameter\[LetterSpace]242 -> 0.0015, parameter\[LetterSpace]243 -> 0.0015, parameter\[LetterSpace]244 -> 0.0025, parameter\[LetterSpace]245 -> 0.0025, parameter\[LetterSpace]27 -> 0.02, parameter\[LetterSpace]28 -> 0.1, parameter\[LetterSpace]29 -> 0.001, parameter\[LetterSpace]3 -> 0.1, parameter\[LetterSpace]30 -> 0.2, parameter\[LetterSpace]31 -> 0.003, parameter\[LetterSpace]32 -> 0.001, parameter\[LetterSpace]33 -> 0.2, parameter\[LetterSpace]34 -> 0.003, parameter\[LetterSpace]35 -> 0.001, parameter\[LetterSpace]36 -> 0.2, parameter\[LetterSpace]37 -> 0.003, parameter\[LetterSpace]38 -> 2*^-07, parameter\[LetterSpace]39 -> 0.2, parameter\[LetterSpace]4 -> 0.05, parameter\[LetterSpace]40 -> 0.005, parameter\[LetterSpace]41 -> 0.1, parameter\[LetterSpace]42 -> 0.02, parameter\[LetterSpace]43 -> 0.001, parameter\[LetterSpace]44 -> 0.2, parameter\[LetterSpace]45 -> 0.005, parameter\[LetterSpace]46 -> 0.001, parameter\[LetterSpace]47 -> 0.2, parameter\[LetterSpace]48 -> 0.005, parameter\[LetterSpace]49 -> 0.2, parameter\[LetterSpace]5 -> 0.02, parameter\[LetterSpace]50 -> 2*^-07, parameter\[LetterSpace]51 -> 0.05, parameter\[LetterSpace]52 -> 0.01, parameter\[LetterSpace]53 -> 400.0, parameter\[LetterSpace]54 -> 0.001, parameter\[LetterSpace]55 -> 0.01, parameter\[LetterSpace]56 -> 5.0, parameter\[LetterSpace]57 -> 0.1, parameter\[LetterSpace]58 -> 0.0005, parameter\[LetterSpace]59 -> 0.0006, parameter\[LetterSpace]6 -> 0.02, parameter\[LetterSpace]60 -> 0.003, parameter\[LetterSpace]61 -> 6.0, parameter\[LetterSpace]62 -> 0.06, parameter\[LetterSpace]63 -> 0.01, parameter\[LetterSpace]64 -> 0.55, parameter\[LetterSpace]65 -> 0.01, parameter\[LetterSpace]66 -> 0.0214, parameter\[LetterSpace]67 -> 0.015, parameter\[LetterSpace]68 -> 1.3, parameter\[LetterSpace]69 -> 0.5, parameter\[LetterSpace]70 -> 0.0001, parameter\[LetterSpace]71 -> 0.001, parameter\[LetterSpace]72 -> 0.0053, parameter\[LetterSpace]73 -> 1.0, parameter\[LetterSpace]74 -> 0.0007, parameter\[LetterSpace]75 -> 0.0079, parameter\[LetterSpace]76 -> 0.4, parameter\[LetterSpace]77 -> 0.023, parameter\[LetterSpace]78 -> 0.00022, parameter\[LetterSpace]79 -> 0.47, parameter\[LetterSpace]80 -> 0.000245, parameter\[LetterSpace]81 -> 0.3, parameter\[LetterSpace]82 -> 0.021, parameter\[LetterSpace]83 -> 0.0015, parameter\[LetterSpace]84 -> 0.0045, parameter\[LetterSpace]85 -> 1.7, parameter\[LetterSpace]86 -> 340.0, parameter\[LetterSpace]87 -> 0.3, parameter\[LetterSpace]88 -> 0.0009, parameter\[LetterSpace]89 -> 0.01, parameter\[LetterSpace]90 -> 0.55, parameter\[LetterSpace]91 -> 0.3, parameter\[LetterSpace]92 -> 0.0009, parameter\[LetterSpace]93 -> 0.03, parameter\[LetterSpace]94 -> 0.064, parameter\[LetterSpace]95 -> 0.03, parameter\[LetterSpace]96 -> 0.0429, parameter\[LetterSpace]97 -> 0.0717, parameter\[LetterSpace]98 -> 0.2, parameter\[LetterSpace]99 -> 1.0, species\[LetterSpace]1 -> 0.0, species\[LetterSpace]2 -> 8.0, species\[LetterSpace]4 -> 0.8, species\[LetterSpace]79 -> 0.1, c2 -> 1.0, c3 -> 1.0, compartment\[LetterSpace]1 -> 1.0, default -> 1.0 }; assignments = { function\[LetterSpace]3[substrate_,Km_,V_] -> (substrate*V)/(Km + substrate), function\[LetterSpace]1[parameter\[LetterSpace]52_,parameter\[LetterSpace]53_,species\[LetterSpace]23_] -> (parameter\[LetterSpace]52*species\[LetterSpace]23)/(parameter\[LetterSpace]53 + species\[LetterSpace]23), function\[LetterSpace]2[parameter\[LetterSpace]55_,species\[LetterSpace]31_] -> parameter\[LetterSpace]55*species\[LetterSpace]31, function\[LetterSpace]activation[v_,a_,b_,k_] -> (a*b*v)/(b + k), function\[LetterSpace]4\[LetterSpace]reaction\[LetterSpace]n7\[LetterSpace]1[parameter\[LetterSpace]231_,parameter\[LetterSpace]232_,species\[LetterSpace]92_] -> (parameter\[LetterSpace]231*species\[LetterSpace]92)/(parameter\[LetterSpace]232 + species\[LetterSpace]92), function\[LetterSpace]9[c2_,parameter\[LetterSpace]171_,species\[LetterSpace]102_] -> c2*parameter\[LetterSpace]171*species\[LetterSpace]102, function\[LetterSpace]8[c2_,parameter\[LetterSpace]169_,parameter\[LetterSpace]170_,species\[LetterSpace]102_,species\[LetterSpace]24_,species\[LetterSpace]92_] -> c2*(-(parameter\[LetterSpace]170*species\[LetterSpace]102) + parameter\[LetterSpace]169*species\[LetterSpace]24*species\[LetterSpace]92), function\[LetterSpace]7[parameter\[LetterSpace]159_,species\[LetterSpace]98_] -> parameter\[LetterSpace]159*species\[LetterSpace]98, function\[LetterSpace]6[parameter\[LetterSpace]156_,parameter\[LetterSpace]157_,species\[LetterSpace]92_] -> (parameter\[LetterSpace]156*species\[LetterSpace]92)/(parameter\[LetterSpace]157 + species\[LetterSpace]92), function\[LetterSpace]5[c2_,parameter\[LetterSpace]155_,species\[LetterSpace]94_] -> c2*parameter\[LetterSpace]155*species\[LetterSpace]94, function\[LetterSpace]4[c2_,parameter\[LetterSpace]152_,parameter\[LetterSpace]153_,species\[LetterSpace]24_,species\[LetterSpace]94_,species\[LetterSpace]95_] -> c2*(-(parameter\[LetterSpace]153*species\[LetterSpace]94) + parameter\[LetterSpace]152*species\[LetterSpace]24*species\[LetterSpace]95), s136 -> s120[t] + s122[t] + s126[t] + s135[t] + s139[t] + 2*species\[LetterSpace]101[t] + 2*species\[LetterSpace]102[t] + species\[LetterSpace]103[t] + species\[LetterSpace]85[t] + species\[LetterSpace]86[t] + 2*species\[LetterSpace]87[t] + species\[LetterSpace]90[t] + species\[LetterSpace]91[t] + 2*species\[LetterSpace]92[t] + species\[LetterSpace]94[t] + species\[LetterSpace]95[t], s137 -> s119[t] + s120[t] + s122[t] + s126[t] + s135[t] + species\[LetterSpace]12[t] + species\[LetterSpace]13[t] + 2*species\[LetterSpace]14[t] + species\[LetterSpace]18[t] + species\[LetterSpace]21[t] + 2*species\[LetterSpace]22[t] + 2*species\[LetterSpace]23[t] + 2*species\[LetterSpace]25[t] + species\[LetterSpace]26[t] + species\[LetterSpace]27[t] + species\[LetterSpace]29[t] }; events = { }; speciesAnnotations = { }; reactionAnnotations = { }; units = { {"time" -> "", "metabolite" -> "", "extent" -> ""} }; (* Time evolution *) odes = { s118'[t] == 1.0*re112 -1.0*re113, s119'[t] == 1.0*re114 , s120'[t] == 1.0*re115 -1.0*re117 -1.0*re153, s122'[t] == 1.0*re117 +1.0*re121 -1.0*re126, s126'[t] == 1.0*re126 -1.0*re163 -1.0*re164, s135'[t] == 1.0*re153 -1.0*re161 -1.0*re162, s138'[t] == 1.0*re157 -1.0*re158, s139'[t] == 1.0*re159 , s140'[t] == -1.0*re160, species\[LetterSpace]10'[t] == 1.0*reaction\[LetterSpace]4 -1.0*reaction\[LetterSpace]7, species\[LetterSpace]100'[t] == 1.0*reaction\[LetterSpace]98 -1.0*reaction\[LetterSpace]107, species\[LetterSpace]101'[t] == 1.0*re142 -1.0*re143, species\[LetterSpace]102'[t] == 1.0*re147 -1.0*re148, species\[LetterSpace]103'[t] == 1.0*re148 +1.0*reaction\[LetterSpace]106 , species\[LetterSpace]104'[t] == 1.0*reaction\[LetterSpace]107 -1.0*reaction\[LetterSpace]110, species\[LetterSpace]105'[t] == 1.0*reaction\[LetterSpace]110 -1.0*reaction\[LetterSpace]108 -1.0*reaction\[LetterSpace]109, species\[LetterSpace]106'[t] == 1.0*reaction\[LetterSpace]109 , species\[LetterSpace]107'[t] == -1.0*re135, species\[LetterSpace]108'[t] == 1.0*re137 +1.0*re136 +1.0*reaction\[LetterSpace]87 +1.0*reaction\[LetterSpace]108 -1.0*re138 -1.0*reaction\[LetterSpace]110 -1.0*reaction\[LetterSpace]86, species\[LetterSpace]11'[t] == 1.0*reaction\[LetterSpace]14 +1.0*reaction\[LetterSpace]22 +1.0*re162 -1.0*reaction\[LetterSpace]16 -1.0*reaction\[LetterSpace]4 -1.0*re112, species\[LetterSpace]12'[t] == 1.0*reaction\[LetterSpace]7 +1.0*re113 +1.0*re161 -1.0*reaction\[LetterSpace]8 -2.0*reaction\[LetterSpace]9 -1.0*reaction\[LetterSpace]12 -1.0*reaction\[LetterSpace]16 -1.0*re114 -1.0*re115, species\[LetterSpace]13'[t] == 1.0*reaction\[LetterSpace]8 , species\[LetterSpace]14'[t] == 1.0*reaction\[LetterSpace]9 -1.0*reaction\[LetterSpace]13 -1.0*reaction\[LetterSpace]17, species\[LetterSpace]15'[t] == 1.0*reaction\[LetterSpace]26 -1.0*reaction\[LetterSpace]73, species\[LetterSpace]16'[t] == 1.0*re138 -1.0*re137 -1.0*reaction\[LetterSpace]39, species\[LetterSpace]18'[t] == 1.0*reaction\[LetterSpace]15 +1.0*reaction\[LetterSpace]16 , species\[LetterSpace]19'[t] == 1.0*reaction\[LetterSpace]25 +1.0*reaction\[LetterSpace]73 -1.0*reaction\[LetterSpace]26 -1.0*reaction\[LetterSpace]28, species\[LetterSpace]20'[t] == 1.0*reaction\[LetterSpace]14 +1.0*reaction\[LetterSpace]15 +1.0*re141 +1.0*re143 +1.0*re161 +1.0*re162 -1.0*reaction\[LetterSpace]12 -1.0*reaction\[LetterSpace]13 -1.0*re140 -1.0*re142 -1.0*re153, species\[LetterSpace]21'[t] == 1.0*reaction\[LetterSpace]12 -1.0*reaction\[LetterSpace]14, species\[LetterSpace]22'[t] == 1.0*reaction\[LetterSpace]13 -1.0*reaction\[LetterSpace]15, species\[LetterSpace]23'[t] == 1.0*reaction\[LetterSpace]17 -1.0*reaction\[LetterSpace]65 -1.0*reaction\[LetterSpace]18, species\[LetterSpace]24'[t] == 1.0*reaction\[LetterSpace]20 +1.0*reaction\[LetterSpace]21 +1.0*re145 +1.0*re148 +1.0*re163 +1.0*re164 -1.0*reaction\[LetterSpace]19 -1.0*reaction\[LetterSpace]18 -1.0*re144 -1.0*re147 -1.0*re126, species\[LetterSpace]25'[t] == 1.0*reaction\[LetterSpace]18 -1.0*reaction\[LetterSpace]21, species\[LetterSpace]26'[t] == 2.0*reaction\[LetterSpace]65 +1.0*reaction\[LetterSpace]66 +1.0*re163 -1.0*reaction\[LetterSpace]19 -1.0*re121, species\[LetterSpace]27'[t] == 1.0*reaction\[LetterSpace]19 -1.0*reaction\[LetterSpace]20, species\[LetterSpace]28'[t] == 1.0*reaction\[LetterSpace]20 +1.0*reaction\[LetterSpace]66 +1.0*re164 -1.0*reaction\[LetterSpace]22, species\[LetterSpace]29'[t] == 1.0*reaction\[LetterSpace]21 -1.0*reaction\[LetterSpace]66, species\[LetterSpace]3'[t] == 1.0*reaction\[LetterSpace]1 -1.0*reaction\[LetterSpace]3, species\[LetterSpace]30'[t] == 1.0*reaction\[LetterSpace]23 +1.0*re116 -1.0*reaction\[LetterSpace]24, species\[LetterSpace]31'[t] == 1.0*reaction\[LetterSpace]24 -1.0*reaction\[LetterSpace]27, species\[LetterSpace]32'[t] == 1.0*reaction\[LetterSpace]40 -1.0*reaction\[LetterSpace]29 -1.0*reaction\[LetterSpace]43, species\[LetterSpace]33'[t] == 1.0*reaction\[LetterSpace]39 -1.0*reaction\[LetterSpace]29 -1.0*reaction\[LetterSpace]42 -1.0*reaction\[LetterSpace]46, species\[LetterSpace]34'[t] == 1.0*reaction\[LetterSpace]29 -1.0*reaction\[LetterSpace]30 -1.0*reaction\[LetterSpace]44, species\[LetterSpace]35'[t] == 1.0*reaction\[LetterSpace]40 -1.0*reaction\[LetterSpace]30 -1.0*reaction\[LetterSpace]45, species\[LetterSpace]36'[t] == 1.0*reaction\[LetterSpace]43 +1.0*reaction\[LetterSpace]44 -1.0*reaction\[LetterSpace]45, species\[LetterSpace]37'[t] == 1.0*reaction\[LetterSpace]30 +1.0*reaction\[LetterSpace]32 +1.0*reaction\[LetterSpace]36 +1.0*reaction\[LetterSpace]46 -1.0*reaction\[LetterSpace]31 -1.0*reaction\[LetterSpace]35 -1.0*reaction\[LetterSpace]37, species\[LetterSpace]38'[t] == 1.0*reaction\[LetterSpace]36 -1.0*reaction\[LetterSpace]31, species\[LetterSpace]39'[t] == 1.0*reaction\[LetterSpace]31 -1.0*reaction\[LetterSpace]32, species\[LetterSpace]40'[t] == 1.0*reaction\[LetterSpace]32 -1.0*reaction\[LetterSpace]33, species\[LetterSpace]41'[t] == 1.0*reaction\[LetterSpace]48 -1.0*reaction\[LetterSpace]33, species\[LetterSpace]42'[t] == 1.0*reaction\[LetterSpace]33 -1.0*reaction\[LetterSpace]34, species\[LetterSpace]43'[t] == 1.0*reaction\[LetterSpace]34 -1.0*reaction\[LetterSpace]35, species\[LetterSpace]44'[t] == 1.0*reaction\[LetterSpace]34 +1.0*reaction\[LetterSpace]50 +1.0*reaction\[LetterSpace]52 -1.0*reaction\[LetterSpace]47 -1.0*reaction\[LetterSpace]49 -1.0*reaction\[LetterSpace]51, species\[LetterSpace]45'[t] == 1.0*reaction\[LetterSpace]35 -1.0*reaction\[LetterSpace]36, species\[LetterSpace]46'[t] == 1.0*reaction\[LetterSpace]37 +1.0*reaction\[LetterSpace]45 -1.0*reaction\[LetterSpace]38, species\[LetterSpace]47'[t] == 1.0*reaction\[LetterSpace]38 -1.0*reaction\[LetterSpace]40 -1.0*reaction\[LetterSpace]46, species\[LetterSpace]48'[t] == 1.0*reaction\[LetterSpace]38 +1.0*reaction\[LetterSpace]42 -1.0*re136 -1.0*reaction\[LetterSpace]43, species\[LetterSpace]49'[t] == 1.0*reaction\[LetterSpace]48 -1.0*reaction\[LetterSpace]47, species\[LetterSpace]5'[t] == -1.0*re135, species\[LetterSpace]50'[t] == 1.0*reaction\[LetterSpace]47 -1.0*reaction\[LetterSpace]48, species\[LetterSpace]51'[t] == 1.0*reaction\[LetterSpace]56 -1.0*reaction\[LetterSpace]49, species\[LetterSpace]52'[t] == 1.0*reaction\[LetterSpace]49 -1.0*reaction\[LetterSpace]50, species\[LetterSpace]53'[t] == 1.0*reaction\[LetterSpace]50 +1.0*reaction\[LetterSpace]54 -1.0*reaction\[LetterSpace]51 -1.0*reaction\[LetterSpace]55, species\[LetterSpace]54'[t] == 1.0*reaction\[LetterSpace]51 -1.0*reaction\[LetterSpace]52, species\[LetterSpace]55'[t] == 1.0*reaction\[LetterSpace]52 +1.0*reaction\[LetterSpace]58 +1.0*reaction\[LetterSpace]60 -1.0*reaction\[LetterSpace]53 -1.0*reaction\[LetterSpace]57 -1.0*reaction\[LetterSpace]59, species\[LetterSpace]56'[t] == 1.0*reaction\[LetterSpace]53 -1.0*reaction\[LetterSpace]54, species\[LetterSpace]57'[t] == 1.0*reaction\[LetterSpace]54 +1.0*reaction\[LetterSpace]56 -1.0*reaction\[LetterSpace]53 -1.0*reaction\[LetterSpace]55, species\[LetterSpace]58'[t] == 1.0*reaction\[LetterSpace]55 -1.0*reaction\[LetterSpace]56, species\[LetterSpace]59'[t] == 1.0*reaction\[LetterSpace]63 -1.0*reaction\[LetterSpace]57, species\[LetterSpace]6'[t] == 1.0*re160 -1.0*reaction\[LetterSpace]3, species\[LetterSpace]60'[t] == 1.0*reaction\[LetterSpace]57 -1.0*reaction\[LetterSpace]58, species\[LetterSpace]61'[t] == 1.0*reaction\[LetterSpace]58 +1.0*reaction\[LetterSpace]61 -1.0*reaction\[LetterSpace]59 -1.0*reaction\[LetterSpace]62, species\[LetterSpace]62'[t] == 1.0*reaction\[LetterSpace]59 -1.0*reaction\[LetterSpace]60, species\[LetterSpace]63'[t] == 1.0*reaction\[LetterSpace]60 -1.0*reaction\[LetterSpace]64, species\[LetterSpace]64'[t] == 1.0*reaction\[LetterSpace]61 +1.0*reaction\[LetterSpace]63 -1.0*reaction\[LetterSpace]64 -1.0*reaction\[LetterSpace]62, species\[LetterSpace]65'[t] == 1.0*reaction\[LetterSpace]64 -1.0*reaction\[LetterSpace]61, species\[LetterSpace]66'[t] == 1.0*reaction\[LetterSpace]62 -1.0*reaction\[LetterSpace]63, species\[LetterSpace]7'[t] == 1.0*reaction\[LetterSpace]3 -2.0*reaction\[LetterSpace]5, species\[LetterSpace]74'[t] == 1.0*reaction\[LetterSpace]75 -1.0*reaction\[LetterSpace]74, species\[LetterSpace]75'[t] == 1.0*reaction\[LetterSpace]74 -1.0*reaction\[LetterSpace]75 -2.0*reaction\[LetterSpace]76, species\[LetterSpace]76'[t] == 1.0*reaction\[LetterSpace]76 , species\[LetterSpace]78'[t] == 1.0*re135 -1.0*reaction\[LetterSpace]80, species\[LetterSpace]8'[t] == 1.0*re137 +1.0*reaction\[LetterSpace]73 +1.0*reaction\[LetterSpace]5 -1.0*reaction\[LetterSpace]6, species\[LetterSpace]80'[t] == 1.0*reaction\[LetterSpace]80 -2.0*reaction\[LetterSpace]79, species\[LetterSpace]81'[t] == 1.0*reaction\[LetterSpace]87 +1.0*reaction\[LetterSpace]79 +1.0*reaction\[LetterSpace]108 -1.0*reaction\[LetterSpace]81, species\[LetterSpace]82'[t] == 1.0*reaction\[LetterSpace]81 +1.0*reaction\[LetterSpace]83 +1.0*re113 -1.0*reaction\[LetterSpace]98 -1.0*reaction\[LetterSpace]82 -1.0*reaction\[LetterSpace]84 -1.0*reaction\[LetterSpace]86 -1.0*re112 -1.0*re114, species\[LetterSpace]83'[t] == 1.0*reaction\[LetterSpace]82 -1.0*reaction\[LetterSpace]83, species\[LetterSpace]84'[t] == 1.0*re141 +1.0*reaction\[LetterSpace]94 +1.0*reaction\[LetterSpace]108 +1.0*re161 -1.0*reaction\[LetterSpace]90 -1.0*reaction\[LetterSpace]107 -1.0*reaction\[LetterSpace]82 -1.0*re157, species\[LetterSpace]85'[t] == 1.0*reaction\[LetterSpace]83 +1.0*re158 +1.0*re162 -1.0*re140 -1.0*reaction\[LetterSpace]90 -1.0*reaction\[LetterSpace]84 -2.0*reaction\[LetterSpace]85 -1.0*re159 -1.0*re115, species\[LetterSpace]86'[t] == 1.0*reaction\[LetterSpace]84 , species\[LetterSpace]87'[t] == 1.0*reaction\[LetterSpace]85 -1.0*reaction\[LetterSpace]91 -1.0*re142, species\[LetterSpace]88'[t] == 1.0*reaction\[LetterSpace]86 -1.0*reaction\[LetterSpace]87, species\[LetterSpace]9'[t] == 1.0*reaction\[LetterSpace]37 +1.0*reaction\[LetterSpace]42 +1.0*reaction\[LetterSpace]44 +1.0*reaction\[LetterSpace]6 +1.0*reaction\[LetterSpace]7 +1.0*re158 -1.0*reaction\[LetterSpace]8 -1.0*re138 -1.0*reaction\[LetterSpace]26 -1.0*reaction\[LetterSpace]4 -1.0*re157 -1.0*re159, species\[LetterSpace]90'[t] == 1.0*re140 -1.0*re141, species\[LetterSpace]91'[t] == 1.0*reaction\[LetterSpace]90 +1.0*re143 , species\[LetterSpace]92'[t] == 1.0*reaction\[LetterSpace]91 +1.0*reaction\[LetterSpace]103 -1.0*re147, species\[LetterSpace]94'[t] == 1.0*re144 -1.0*re145, species\[LetterSpace]95'[t] == 1.0*re164 -1.0*re144 -2.0*reaction\[LetterSpace]103 -1.0*reaction\[LetterSpace]106 -1.0*re121, species\[LetterSpace]96'[t] == 1.0*re145 +1.0*re163 -1.0*reaction\[LetterSpace]94 -1.0*reaction\[LetterSpace]106, species\[LetterSpace]97'[t] == 1.0*reaction\[LetterSpace]95 -1.0*reaction\[LetterSpace]96, species\[LetterSpace]98'[t] == 1.0*reaction\[LetterSpace]96 -1.0*reaction\[LetterSpace]99, species\[LetterSpace]99'[t] == 1.0*reaction\[LetterSpace]97 +1.0*reaction\[LetterSpace]108 +1.0*reaction\[LetterSpace]109 -1.0*reaction\[LetterSpace]98 -1.0*reaction\[LetterSpace]100 }; timeCourse = NDSolve[Join[odes, initialValues]//.rateEquations//.assignments//.parameters, variables, {t, 0, 100}]; (* Steady-state solution initialized with result of time evolution *) findRootEquations = odes /.D[_[t],t]->0; findRootVariables = Partition[Flatten[{#, #/.timeCourse/.t->100} &/@variables],2]; steadyStateVariables = FindRoot[findRootEquations//.rateEquations//.assignments//.parameters, findRootVariables, MaxIterations->100] fluxes = #//.assignments//.parameters/.steadyStateVariables&/@rateEquations (* Plot the time evolution of the variables *) plotTable=Table[Plot[variables[[i]]/.parameters/.timeCourse,{t,0,100},PlotLegends->variables[[i]],PlotRange->Full],{i,Length[variables]}]