#legewie2 #reactions v1: {1.0}A + {1.0}C9 = {1.0}AC9 cytosol * (k1 * A * C9 - kb1 * AC9) v10: {1.0}AC9 + {1.0}X = {1.0}AC9X cytosol * (k10 * AC9 * X - k10b * AC9X) v11: {1.0}C9_star + {1.0}X = {1.0}C9_starX cytosol * (k11 * C9_star * X - k11b * C9_starX) v12: {1.0}AC9_star + {1.0}X = {1.0}AC9_starX cytosol * (k12 * AC9_star * X - k12b * AC9_starX) v13: {1.0}C9X + {1.0}A = {1.0}AC9X cytosol * (k13 * C9X * A - k13b * AC9X) v14: {1.0}C9_starX + {1.0}A = {1.0}AC9_starX cytosol * (k14 * C9_starX * A - k14b * AC9_starX) v15: {1.0}C3_star + {1.0}X = {1.0}C3_starX cytosol * (k15 * C3_star * X - k15b * C3_starX) v16: $pool = {1.0}A cytosol * (k16prod - k16 * A) v17: $pool = {1.0}C9 cytosol * (k17prod - k17 * C9) v18: $pool = {1.0}X cytosol * (k18prod - k18 * X) v19: {1.0}C9X = $pool cytosol * k19 * C9X v2: {1.0}C3 + {1.0}C9 = {1.0}C3_star + {1.0}C9 cytosol * k2 * C3 * C9 v20: {1.0}AC9X = $pool cytosol * k20 * AC9X v21: {1.0}AC9 = $pool cytosol * k21 * AC9 v22: $pool = {1.0}C3 cytosol * (k22prod - k22 * C3) v23: {1.0}C3_star = $pool cytosol * k23 * C3_star v24: {1.0}C3_starX = $pool cytosol * k24 * C3_starX v25: {1.0}C9_starX = $pool cytosol * k25 * C9_starX v26: {1.0}C9_star = $pool cytosol * k26 * C9_star v27: {1.0}AC9_star = $pool cytosol * k27 * AC9_star v28: {1.0}AC9_starX = $pool cytosol * k28 * AC9_starX v29: {1.0}C9X_C3_star = $pool cytosol * k29 * C9X_C3_star v3: {1.0}C3 + {1.0}AC9 = {1.0}C3_star + {1.0}AC9 cytosol * k3 * C3 * AC9 v30: {1.0}AC9_starX_C3_star = $pool cytosol * k30 * AC9_starX_C3_star v31: {1.0}C9_starX_C3_star = $pool cytosol * k31 * C9_starX_C3_star v32: {1.0}AC9_starX_C3_star = $pool cytosol * k32 * AC9_starX_C3_star v33: {1.0}C3_star + {1.0}C9X = {1.0}C9X_C3_star cytosol * (a * k15 * C3_star * C9X - d * k15b * C9X_C3_star) v34: {1.0}C3_star + {1.0}AC9X = {1.0}AC9X_C3_star cytosol * (a * k15 * C3_star * AC9X - d * k15b * AC9X_C3_star) v35: {1.0}C3_star + {1.0}C9_starX = {1.0}C9_starX_C3_star cytosol * (a * k15 * C3_star * C9_starX - d * k15b * C9_starX_C3_star) v36: {1.0}C3_star + {1.0}AC9_starX = {1.0}AC9_starX_C3_star cytosol * (a * k15 * C3_star * AC9_starX - d * k15b * AC9_starX_C3_star) v37: {1.0}C9 + {1.0}C3_starX = {1.0}C9X_C3_star cytosol * (a * k9 * C9 * C3_starX - d * k9b * C9X_C3_star) v38: {1.0}AC9 + {1.0}C3_starX = {1.0}AC9X_C3_star cytosol * (a * k9 * AC9 * C3_starX - d * k9b * AC9X_C3_star) v39: {1.0}C9_star + {1.0}C3_starX = {1.0}C9_starX_C3_star cytosol * (a * k9 * C9_star * C3_starX - d * k9b * C9_starX_C3_star) v4: {1.0}C9 + {1.0}C3_star = {1.0}C9_star + {1.0}C3_star cytosol * k4 * C9 * C3_star v40: {1.0}AC9_star + {1.0}C3_starX = {1.0}AC9_starX_C3_star cytosol * (a * k9 * AC9_star * C3_starX - d * k9b * AC9_starX_C3_star) v41: {1.0}C9X_C3_star + {1.0}A = {1.0}AC9X_C3_star cytosol * (a * k1 * C9X_C3_star * A - d * kb1 * AC9X_C3_star) v42: {1.0}C9_starX_C3_star + {1.0}A = {1.0}AC9_starX_C3_star cytosol * (a * k1 * C9_starX_C3_star * A - d * kb1 * AC9_starX_C3_star) v5: {1.0}AC9 + {1.0}C3_star = {1.0}AC9_star + {1.0}C3_star cytosol * k5 * AC9 * C3_star v6: {1.0}C3 + {1.0}C9_star = {1.0}C3_star + {1.0}C9_star cytosol * k6 * C3 * C9_star v7: {1.0}C3 + {1.0}AC9_star = {1.0}C3_star + {1.0}AC9_star cytosol * k7 * C3 * AC9_star v8: {1.0}C9_star + {1.0}A = {1.0}AC9_star cytosol * (k8 * C9_star * A - k8b * AC9_star) v9: {1.0}C9 + {1.0}X = {1.0}C9X cytosol * (k9 * C9 * X - k9b * C9X) #parameters a = 1.0 d = 1.0 k1 = 0.002 k10 = 0.001 k10b = 0.001 k11 = 0.001 k11b = 0.001 k12 = 0.001 k12b = 0.001 k13 = 0.002 k13b = 0.1 k14 = 0.002 k14b = 0.1 k15 = 0.003 k15b = 0.001 k16 = 0.001 k16prod = 0.02 k17 = 0.001 k17prod = 0.02 k18 = 0.001 k18prod = 0.04 k19 = 0.001 k2 = 5e-06 k20 = 0.001 k21 = 0.001 k22 = 0.001 k22prod = 0.2 k23 = 0.001 k24 = 0.001 k25 = 0.001 k26 = 0.001 k27 = 0.001 k28 = 0.001 k29 = 0.001 k3 = 0.00035 k30 = 0.001 k31 = 0.001 k32 = 0.001 k4 = 0.0002 k41 = 1.0 k42 = 1.0 k5 = 0.0002 k6 = 5e-05 k7 = 0.0035 k8 = 0.002 k8b = 0.1 k9 = 0.001 k9b = 0.001 kb1 = 0.1 cytosol = 1.0 #initial values A = 20.0 AC9 = 0.0 AC9X = 0.0 AC9X_C3_star = 0.0 AC9_star = 0.0 AC9_starX = 0.0 AC9_starX_C3_star = 0.0 C3 = 200.0 C3_star = 0.0 C3_starX = 0.0 C9 = 20.0 C9X = 0.0 C9X_C3_star = 0.0 C9_star = 0.0 C9_starX = 0.0 C9_starX_C3_star = 0.0 X = 40.0 #assignment rules