begin name kim2 end name begin reactions R1 {1.0}X1 = {1.0}X2 R10 {1.0}X9 = {1.0}X3 + {1.0}X10 R11 {1.0}X10 = {1.0}$EXTERNAL R12 {1.0}$EXTERNAL = {1.0}X11 R13 {1.0}X11 = {1.0}$EXTERNAL R14 {1.0}$EXTERNAL = {1.0}X12 R15 {1.0}X12 = {1.0}$EXTERNAL R16 {1.0}X13 + {1.0}X11 = {1.0}X14 R17 {1.0}X11 + {1.0}X7 = {1.0}X15 R18 {1.0}X16 = {1.0}X17 R19 {1.0}X17 = {1.0}X16 R2 {1.0}X2 = {1.0}X1 R20 {1.0}X18 = {1.0}X19 R21 {1.0}X19 = {1.0}X18 R22 {1.0}X20 = {1.0}X21 R23 {1.0}X21 = {1.0}X20 R24 {1.0}X22 = {1.0}X23 R25 {1.0}X23 = {1.0}X22 R26 {1.0}X24 = {1.0}X18 + {1.0}X26 R27 {1.0}X18 + {1.0}X25 = {1.0}X24 R28 {1.0}X26 = {1.0}X25 R29 {1.0}$EXTERNAL = {1.0}X27 R3 {1.0}X4 = {1.0}X6 + {1.0}X5 R30 {1.0}X27 = {1.0}$EXTERNAL R31 {1.0}X18 = {1.0}X19 R32 {1.0}X5 = {1.0}X28 R33 {1.0}X28 = {1.0}X5 R4 {1.0}X4 = {1.0}X3 R5 {1.0}X3 = {1.0}X4 R6 {1.0}X6 + {1.0}X5 = {1.0}X4 R7 {1.0}X12 + {1.0}X7 = {1.0}X6 R8 {1.0}X11 + {1.0}X3 = {1.0}X8 R9 {1.0}X8 = {1.0}X9 end reactions begin rate equations R1 = cytoplasm*k1*W*X1[t] R10 = cytoplasm*k10*X9[t] R11 = cytoplasm*k11*X10[t] R12 = cytoplasm*V12 R13 = k13*nucleus*X11[t] R14 = nucleus*(k14 + k21*(X11[t] + X14[t])) R15 = cytoplasm*k15*X12[t] R16 = nucleus*(kplus16*X11[t]*X13[t] - kminus16*X14[t]) R17 = cytoplasm*(-(kminus17*X15[t]) + kplus17*X11[t]*X7[t]) R18 = (cytoplasm*Ki*Vmax1*W*X16[t])/((Km1 + X16[t])*(Ki + X23[t])) R19 = (cytoplasm*Vmax2*X17[t])/(Km2 + X17[t]) R2 = cytoplasm*k2*X2[t] R20 = (cytoplasm*kcat1*X17[t]*X18[t])/(Km3 + X18[t]) R21 = (cytoplasm*Vmax3*X19[t])/(Km4 + X19[t]) R22 = (cytoplasm*kcat2*X19[t]*X20[t])/(Km5 + X20[t]) R23 = (cytoplasm*Vmax4*X21[t])/(Km6 + X21[t]) R24 = (cytoplasm*kcat3*X21[t]*X22[t])/(Km7 + X22[t]) R25 = (cytoplasm*Vmax5*X23[t])/(Km8 + X23[t]) R26 = (cytoplasm*kcat4*X23[t]*X24[t])/(Km9 + X24[t]) R27 = cytoplasm*(-(k19*X24[t]) + k18*X18[t]*X25[t]) R28 = (cytoplasm*Vmax6*X26[t])/(Km10 + X26[t]) R29 = (cytoplasm*kcat5*X14[t]^n1)/(Km11^n1 + X14[t]^n1) R3 = cytoplasm*k3*X2[t]*X4[t] R30 = cytoplasm*k20*X27[t] R31 = (cytoplasm*kcat6*X18[t]*X27[t])/(Km12 + X18[t]) R32 = (cytoplasm*kcat7*X23[t]*X5[t])/(Km13 + X5[t]) R33 = (cytoplasm*Vmax7*X28[t])/(Km14 + X28[t]) R4 = cytoplasm*k4*X4[t] R5 = cytoplasm*k5*X3[t] R6 = cytoplasm*(-(kminus6*X4[t]) + kplus6*X5[t]*X6[t]) R7 = cytoplasm*(-(kminus7*X6[t]) + kplus7*X12[t]*X7[t]) R8 = cytoplasm*(kplus8*X11[t]*X3[t] - kminus8*X8[t]) R9 = cytoplasm*k9*X8[t] end rate equations begin parameters Ki = 9.0 Km1 = 10.0 Km10 = 12.0 Km11 = 15.0 Km12 = 15.0 Km13 = 15.0 Km14 = 15.0 Km2 = 8.0 Km3 = 15.0 Km4 = 15.0 Km5 = 15.0 Km6 = 15.0 Km7 = 15.0 Km8 = 15.0 Km9 = 9.0 V12 = 0.423 Vmax1 = 150.0 Vmax2 = 15.0 Vmax3 = 45.0 Vmax4 = 45.0 Vmax5 = 45.0 Vmax6 = 45.0 Vmax7 = 45.0 W = 0.0 flagforwntsignal = 0.0 k1 = 0.182 k10 = 206.0 k11 = 0.417 k13 = 0.000257 k14 = "8.22e-05" k15 = 0.167 k18 = 0.15 k19 = 39.0 k2 = 0.0182 k20 = 0.015 k21 = "1e-06" k3 = 0.05 k4 = 0.267 k5 = 0.133 k9 = 206.0 kminus16 = 30.0 kminus17 = 1200.0 kminus6 = 0.909 kminus7 = 50.0 kminus8 = 120.0 kplus16 = 1.0 kplus17 = 1.0 kplus6 = 0.0909 kplus7 = 1.0 kplus8 = 1.0 kcat1 = 1.5 kcat2 = 1.5 kcat3 = 1.5 kcat4 = 1.5 kcat5 = 0.6 kcat6 = 1.5 kcat7 = 1.5 n1 = 2.0 cytoplasm = 1.0 nucleus = 1.0 end parameters begin initial conditions X1[0] = X1i X10[0] = X10i X11[0] = X11i X12[0] = X12i X13[0] = X13i X14[0] = X14i X15[0] = X15i X16[0] = X16i X17[0] = X17i X18[0] = X18i X19[0] = X19i X2[0] = X2i X20[0] = X20i X21[0] = X21i X22[0] = X22i X23[0] = X23i X24[0] = X24i X25[0] = X25i X26[0] = X26i X27[0] = X27i X28[0] = X28i X3[0] = X3i X4[0] = X4i X5[0] = X5i X6[0] = X6i X7[0] = X7i X8[0] = X8i X9[0] = X9i end initial conditions begin initial values X1i = 100.0 X10i = 0.9881 X11i = 42.7224 X12i = 0.0008 X13i = 6.1879 X14i = 8.8121 X15i = 3.4392 X16i = 200.0 X17i = 0.0 X18i = 112.5585 X19i = 6.486 X2i = 0.0 X20i = 296.1137 X21i = 3.8863 X22i = 297.8897 X23i = 2.1103 X24i = 180.9595 X25i = 418.1788 X26i = 0.8619 X27i = 10.263 X28i = 0.85544 X3i = 0.0153 X4i = 0.0076 X5i = 49.1372 X6i = 0.0015 X7i = 96.6019 X8i = 0.002 X9i = 0.002 end initial values begin assignment rules X13X14 := X13[t] + X14[t] end assignment rules begin function definitions end function definitions begin events event_0000001 = (t >= 500 && t <= 1000, {W -> 1}, 0) event_0000002 = (t > 1000, {W -> 0}, 0) end events begin process annotations R18 http://identifiers.org/go/GO:0032856 R22 http://identifiers.org/ec-code/2.7.11.1 R22 http://identifiers.org/go/GO:0004709 R22 http://identifiers.org/go/GO:0000186 R32 http://identifiers.org/ec-code/2.7.11.24 R32 http://identifiers.org/go/GO:0004707 R32 http://identifiers.org/go/GO:0016310 R8 http://identifiers.org/go/GO:0008013 R9 http://identifiers.org/ec-code/2.7.11.26 R9 http://identifiers.org/go/GO:0004674 end process annotations begin species annotations end species annotations begin units end units