begin name goldbeter5 end name begin reactions rM {1.0}$EmptySet = {1.0}M rP01 {1.0}P0 = {1.0}P1 rP10 {1.0}P1 = {1.0}P0 rP12 {1.0}P1 = {1.0}P2 rP21 {1.0}P2 = {1.0}P1 rP2n {1.0}P2 = {1.0}Pn rPn2 {1.0}Pn = {1.0}P2 rTL {1.0}$EmptySet = {1.0}P0 rVd {1.0}P2 = {1.0}$EmptySet rmRNAd {1.0}M = {1.0}$EmptySet end reactions begin rate equations rM = (default*rMKI^rMn*rMVs)/(rMKI^rMn + Pn[t]^rMn) rP01 = (CYTOPLASM*rP01V1*P0[t])/(rP01K1 + P0[t]) rP10 = (CYTOPLASM*rP10V2*P1[t])/(rP10K2 + P1[t]) rP12 = (CYTOPLASM*rP12V3*P1[t])/(rP12K3 + P1[t]) rP21 = (CYTOPLASM*rP21V4*P2[t])/(rP21K4 + P2[t]) rP2n = CYTOPLASM*rP2nk1*P2[t] rPn2 = compartment0000004*rPn2k2*Pn[t] rTL = default*rTLks*M[t] rVd = (CYTOPLASM*rVdVd*P2[t])/(rVdKd + P2[t]) rmRNAd = (CYTOPLASM*rmRNAdVm*M[t])/(rmRNAdKm + M[t]) end rate equations begin parameters EmptySet = 0.0 rMVs = 0.76 rMKI = 1.0 rMn = 4.0 rTLks = 0.38 rP01V1 = 3.2 rP01K1 = 2.0 rP10V2 = 1.58 rP10K2 = 2.0 rP12V3 = 5.0 rP12K3 = 2.0 rP21V4 = 2.5 rP21K4 = 2.0 rP2nk1 = 1.9 rPn2k2 = 1.3 rmRNAdKm = 0.5 rmRNAdVm = 0.65 rVdVd = 0.95 rVdKd = 0.2 CYTOPLASM = "1e-15" compartment0000004 = "1e-15" default = "1e-15" end parameters begin initial conditions M[0] = Mi P0[0] = P0i P1[0] = P1i P2[0] = P2i Pn[0] = Pni end initial conditions begin initial values Mi = 0.1 P0i = 0.25 P1i = 0.25 P2i = 0.25 Pni = 0.25 end initial values begin assignment rules Pt := P0[t] + P1[t] + P2[t] + Pn[t] end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations Pn http://identifiers.org/uniprot/P07663 Pt http://identifiers.org/uniprot/P07663 end species annotations begin units end units