begin name borghans2 end name begin reactions v2 {1.0}Z = {1.0}Y v3 {1.0}Y = {1.0}Z v4 {1.0}Y = {1.0}Z v5 {1.0}Z = {1.0}EC v6 {1.0}$EXTERNAL = {1.0}A v7 {1.0}A = {1.0}$EXTERNAL v8 {1.0}A = {1.0}$EXTERNAL vin {1.0}EC = {1.0}Z end reactions begin rate equations v2 = (intravesicular*v2Vm2*Z[t]^2)/(v2K2^2 + Z[t]^2) v3 = (cytosol*v3Vm3*A[t]^4*Y[t]^2*Z[t]^4)/((v3Ka^4 + A[t]^4)*(v3Ky^2 + Y[t]^2)*(v3Kz^4 + Z[t]^4)) v4 = cytosol*v4Kf*Y[t] v5 = extracellular*v5K*Z[t] v6 = beta*cytosol*v6Vp v7 = (cytosol*v7Vd*A[t]^2*Z[t]^v7n)/((v7Kp^2 + A[t]^2)*(v7Kd^v7n + Z[t]^v7n)) v8 = cytosol*v8epsilon*A[t] vin = cytosol*(vinv0 + beta*vinv1) end rate equations begin parameters beta = 0.5 vinv0 = 2.0 vinv1 = 1.0 v2Vm2 = 6.5 v2K2 = 0.1 v3Vm3 = 19.5 v3Ka = 0.2 v3Ky = 0.2 v3Kz = 0.3 v4Kf = 1.0 v5K = 10.0 v6Vp = 2.5 v7Vd = 80.0 v7Kp = 1.0 v7Kd = 0.4 v7n = 4.0 v8epsilon = 0.1 cytosol = 1.0 extracellular = 1.0 intravesicular = 1.0 end parameters begin initial conditions A[0] = Ai EC[0] = ECi Y[0] = Yi Z[0] = Zi end initial conditions begin initial values Ai = 0.45 ECi = 1000.0 Yi = 0.36 Zi = 0.0 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations A http://identifiers.org/chebi/CHEBI:16595 A http://identifiers.org/kegg.compound/C01245 EC http://identifiers.org/chebi/CHEBI:29108 EC http://identifiers.org/kegg.compound/C00076 Y http://identifiers.org/chebi/CHEBI:29108 Y http://identifiers.org/kegg.compound/C00076 Z http://identifiers.org/chebi/CHEBI:29108 Z http://identifiers.org/kegg.compound/C00076 end species annotations begin units end units