begin name
amara1
end name

begin reactions
reaction1 {1.0}species2 + {1.0}species1 = {1.0}species3
reaction10 {1.0}species11 = {1.0}species4 + {1.0}species12
reaction11 {1.0}species8 + {1.0}species18 = {1.0}species15
reaction12 {1.0}species12 + {1.0}species13 = {1.0}species14
reaction13 {1.0}species14 = {1.0}species12 + {1.0}species13
reaction14 {1.0}species14 + {1.0}species15 = {1.0}species16
reaction15 {1.0}species16 = {1.0}species14 + {1.0}species15
reaction16 {1.0}species16 = {1.0}species18 + {1.0}species17
reaction17 {1.0}species17 = {1.0}species13 + {1.0}species19
reaction18 {1.0}species13 + {1.0}species19 = {1.0}species17
reaction19 {1.0}species15 + {1.0}species17 = {1.0}species20
reaction2 {2.0}species5 = {1.0}species4
reaction20 {1.0}species20 = {1.0}species15 + {1.0}species17
reaction21 {1.0}species20 = {1.0}species18 + {1.0}species21
reaction22 {1.0}species21 = {1.0}species13 + {1.0}species22
reaction23 {1.0}species12 = {1.0}species8 + {1.0}species23
reaction24 {1.0}species19 = {2.0}species8 + {1.0}species23
reaction25 {1.0}species22 = {3.0}species8 + {1.0}species23
reaction3 {1.0}species4 = {2.0}species5
reaction4 {1.0}species6 + {1.0}species8 = {1.0}species7
reaction5 {1.0}species3 + {1.0}species4 = {1.0}species9
reaction6 {1.0}species9 = {1.0}species3 + {1.0}species4
reaction7 {1.0}species7 + {1.0}species9 = {1.0}species10
reaction8 {1.0}species10 = {1.0}species7 + {1.0}species9
reaction9 {1.0}species10 = {1.0}species6 + {1.0}species11
end reactions

begin rate equations
reaction1 = compartment1*reaction1k1*species1[t]*species2[t]
reaction10 = compartment1*reaction10k1*species11[t]
reaction11 = compartment1*reaction11k1*species18[t]*species8[t]
reaction12 = compartment1*reaction12k1*species12[t]*species13[t]
reaction13 = compartment1*reaction13k1*species14[t]
reaction14 = compartment1*reaction14k1*species14[t]*species15[t]
reaction15 = compartment1*reaction15k1*species16[t]
reaction16 = compartment1*reaction16k1*species16[t]
reaction17 = compartment1*reaction17k1*species17[t]
reaction18 = compartment1*reaction18k1*species13[t]*species19[t]
reaction19 = compartment1*reaction19k1*species15[t]*species17[t]
reaction2 = compartment1*reaction2k1*species5[t]^2
reaction20 = compartment1*reaction20k1*species20[t]
reaction21 = compartment1*reaction21k1*species20[t]
reaction22 = compartment1*reaction22k1*species21[t]
reaction23 = compartment1*reaction23k1*species12[t]
reaction24 = compartment1*reaction24k1*species19[t]
reaction25 = compartment1*reaction25k1*species22[t]
reaction3 = compartment1*reaction3k1*species4[t]
reaction4 = compartment1*reaction4k1*species6[t]*species8[t]
reaction5 = compartment1*reaction5k1*species3[t]*species4[t]
reaction6 = compartment1*reaction6k1*species9[t]
reaction7 = compartment1*reaction7k1*species7[t]*species9[t]
reaction8 = compartment1*reaction8k1*species10[t]
reaction9 = compartment1*reaction9k1*species10[t]
end rate equations

begin parameters
reaction19k1 = 0.078
reaction20k1 = "1e-10"
reaction21k1 = 0.005
reaction22k1 = 0.005
reaction23k1 = "3e-08"
reaction24k1 = 0.0008
reaction25k1 = 0.005
reaction1k1 = "1.5e-08"
reaction2k1 = 0.01
reaction3k1 = 1000.0
reaction4k1 = "2.5e-07"
reaction5k1 = 100000.0
reaction6k1 = 1000.0
reaction7k1 = 0.0351
reaction8k1 = 0.01
reaction9k1 = 0.01
reaction10k1 = 1.0
reaction11k1 = 100000.0
reaction12k1 = "5e-06"
reaction13k1 = 0.005
reaction14k1 = 0.078
reaction15k1 = "1e-10"
reaction16k1 = 0.05
reaction17k1 = "7.5e-06"
reaction18k1 = "5e-06"
compartment1 = 1.0
end parameters

begin initial conditions
species1[0] = species1i
species10[0] = species10i
species11[0] = species11i
species12[0] = species12i
species13[0] = species13i
species14[0] = species14i
species15[0] = species15i
species16[0] = species16i
species17[0] = species17i
species18[0] = species18i
species19[0] = species19i
species2[0] = species2i
species20[0] = species20i
species21[0] = species21i
species22[0] = species22i
species23[0] = species23i
species3[0] = species3i
species4[0] = species4i
species5[0] = species5i
species6[0] = species6i
species7[0] = species7i
species8[0] = species8i
species9[0] = species9i
end initial conditions

begin initial values
species1i = 1001.0
species10i = 0.0
species11i = 0.0
species12i = 0.0
species13i = 1520.0
species14i = 0.0
species15i = 0.0
species16i = 0.0
species17i = 0.0
species18i = 193.0
species19i = 0.0
species2i = 7480.0
species20i = 0.0
species21i = 0.0
species22i = 0.0
species23i = 0.0
species3i = 0.0
species4i = 0.0
species5i = 206.0
species6i = 194.0
species7i = 0.0
species8i = 8698.0
species9i = 0.0
end initial values

begin assignment rules
parameter1 := species11[t] + species12[t] + species14[t] + species16[t] + species17[t] + species19[t] + species20[t] + species21[t] + species22[t]
end assignment rules

begin function definitions
end function definitions

begin events
end events

begin process annotations
end process annotations

begin species annotations
species_2 http://identifiers.org/uniprot/P15873
end species annotations

begin units
end units