begin name aguda1 end name begin reactions v1 {1.0}pRBE2F = {1.0}aCYCEcdk21 + {1.0}E2F v10 {1.0}CYCDcdk4 = {1.0}$xvar v11 {1.0}$xvar = {1.0}p27 v12 {1.0}p27 = {1.0}$xvar v13 {1.0}aCYCEcdk2 + {1.0}p27 = {1.0}CYCEcdk2p27 v14 {1.0}CYCEcdk2p27 = {1.0}aCYCEcdk2 + {1.0}p27 v15 {1.0}aCYCEcdk20 + {1.0}CYCDcdk4 = {1.0}$xvar v16 {1.0}$xvar = {1.0}E2F v17 {1.0}CYCDcdk4 + {1.0}p27 = {1.0}CYCDcdk4p27 v18 {1.0}CYCDcdk4p27 = {1.0}CYCDcdk4 + {1.0}p27 v19 {1.0}aCYCEcdk2 = {1.0}$xvar v2 {1.0}E2F + {1.0}pRB = {1.0}pRBE2F v20 {1.0}p27 = {1.0}$xvar v21 {1.0}$xvar = {1.0}aCYCEcdk20 v22 {1.0}aCYCEcdk20 = {1.0}$xvar v23 {1.0}$xvar = {1.0}aCYCEcdk20 v24 {1.0}$xvar = {1.0}pRB v25 {1.0}$xvar = {1.0}pRB v26 {1.0}pRB = {1.0}$xvar v27 {1.0}aCYCEcdk21 = {1.0}pRB v3 {1.0}iCYCEcdk2 = {1.0}aCYCEcdk2 v4 {1.0}aCYCEcdk2 = {1.0}iCYCEcdk2 v5 {1.0}$xvar = {1.0}iCYCEcdk2 v6 {1.0}$xvar = {1.0}E2F v7 {1.0}E2F = {1.0}$xvar v8 {1.0}iCYCEcdk2 = {1.0}$xvar v9 {1.0}$xvar = {1.0}CYCDcdk4 end reactions begin rate equations v1 = k1*aCYCEcdk2[t]*pRBE2F[t] + k1a*CYCDcdk4[t]*pRBE2F[t] + k1aa*CYCDcdk4p27[t]*pRBE2F[t] v10 = kmin6*CYCDcdk4[t] v11 = k7 v12 = k8*aCYCEcdk2[t]*p27[t] v13 = k9*aCYCEcdk2[t]*p27[t] v14 = k10*CYCEcdk2p27[t] v15 = k17*aCYCEcdk20[t]*CYCDcdk4[t] v16 = k18*E2F[t] v17 = k19*CYCDcdk4[t]*p27[t] v18 = k20*CYCDcdk4p27[t] v19 = k21*aCYCEcdk2[t]^2 v2 = kmin1*E2F[t]*pRB[t] v20 = k22*p27[t] v21 = k23 v22 = k24*aCYCEcdk20[t] v23 = k25/(1 + k25a*pRB[t]) v24 = k26/(1 + k26a*aCYCEcdk20[t]) v25 = k27 v26 = k28*pRB[t] v27 = k29*aCYCEcdk21[t] v3 = k2*aCYCEcdk2[t]*iCYCEcdk2[t] v4 = kmin2*aCYCEcdk2[t] v5 = k3a + k3*E2F[t] v6 = k4 v7 = kmin4*E2F[t] v8 = k5*iCYCEcdk2[t] v9 = k6 end rate equations begin parameters k1 = 0.1 k10 = 0.035 k17 = 3.5 k18 = "1e-05" k19 = 0.05 k1a = 0.5 k1aa = 0.5 k2 = 0.1 k20 = 0.01 k21 = 0.1 k22 = 0.001 k23 = 0.2 k24 = 0.1 k25 = 0.01 k25a = 0.02 k26 = 0.01 k26a = 0.1 k27 = 0.01 k28 = 0.01 k29 = 0.001 k3 = 1.42 k3a = 0.0 k4 = "1e-06" k5 = 0.02 k6 = 0.018 k7 = "1e-05" k8 = 2.0 k9 = 2.0 kmin1 = 0.001 kmin2 = 1.0 kmin4 = 0.016 kmin6 = 5.0 xvar = 0.0 defaultcompartment = 1.0 end parameters begin initial conditions CYCDcdk4[0] = CYCDcdk4i CYCDcdk4p27[0] = CYCDcdk4p27i CYCEcdk2p27[0] = CYCEcdk2p27i E2F[0] = E2Fi aCYCEcdk2[0] = aCYCEcdk2i aCYCEcdk20[0] = aCYCEcdk20i aCYCEcdk21[0] = aCYCEcdk21i iCYCEcdk2[0] = iCYCEcdk2i p27[0] = p27i pRB[0] = pRBi pRBE2F[0] = pRBE2Fi end initial conditions begin initial values CYCDcdk4i = 0.0 CYCDcdk4p27i = 0.0 CYCEcdk2p27i = 1.0 E2Fi = 0.0 aCYCEcdk2i = 0.0 aCYCEcdk20i = 5.0 aCYCEcdk21i = 0.01 iCYCEcdk2i = 0.01 p27i = 2.0 pRBi = 0.05 pRBE2Fi = 1.95 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units