begin name achcar1 end name begin reactions AKc {2.0}ADPc = {1.0}AMPc + {1.0}ATPc AKg {44.5116}ADPg = {22.2558}AMPg + {22.2558}ATPg ALDg {22.2558}Fru16BPg = {22.2558}DHAPg + {22.2558}GA3Pg ATPuc {1.0}ATPc = {1.0}ADPc ENOc {1.0}PGA2c = {1.0}PEPc G3PDHg {22.2558}DHAPg + {22.2558}NADHg = {22.2558}Gly3Pg + {22.2558}NADg GAPDHg {1.0}$Pig + {22.2558}GA3Pg + {22.2558}NADg = {22.2558}BPGA13g + {22.2558}NADHg GDAg {1.0}DHAPc + {22.2558}Gly3Pg = {1.0}Gly3Pc + {22.2558}DHAPg GKg {22.2558}ADPg + {22.2558}Gly3Pg = {22.2558}ATPg + {22.2558}Glyg GPOc {1.0}Gly3Pc = {1.0}DHAPc GlcTc {1.0}$Glce = {1.0}Glcc GlcTg {1.0}Glcc = {22.2558}Glcg GlyTc {1.0}Glyc = {1.0}$Glye Glytg {22.2558}Glyg = {1.0}Glyc HXKg {22.2558}ATPg + {22.2558}Glcg = {22.2558}ADPg + {22.2558}Glc6Pg PFKg {22.2558}ATPg + {22.2558}Fru6Pg = {22.2558}ADPg + {22.2558}Fru16BPg PGA3Tg {22.2558}PGA3g = {1.0}PGA3c PGAMc {1.0}PGA3c = {1.0}PGA2c PGIg {22.2558}Glc6Pg = {22.2558}Fru6Pg PGKg {22.2558}BPGA13g + {22.2558}ADPg = {22.2558}PGA3g + {22.2558}ATPg PYKc {1.0}ADPc + {1.0}PEPc = {1.0}ATPc + {1.0}Pyrc PyrTc {1.0}Pyrc = {1.0}$Pyre TPIg {22.2558}DHAPg = {22.2558}GA3Pg end reactions begin rate equations AKc = (AKcAKck1*ADPc[t]^2 - AKcAKck2*AMPc[t]*ATPc[t])/cytosol AKg = (AKgAKgk1*ADPg[t]^2 - AKgAKgk2*AMPg[t]*ATPg[t])/cytosol ALDg = (ALDgALDgVmax*Fru16BPg[t]*(1 - (DHAPg[t]*GA3Pg[t])/(ALDgALDgKeq*Fru16BPg[t])))/(ALDgALDgKmFru16BP*cytosol*(1 + ADPg[t]/ALDgALDgKiADP + AMPg[t]/ALDgALDgKiAMP + ATPg[t]/ALDgALDgKiATP)*(1 + DHAPg[t]/ALDgALDgKmDHAP + Fru16BPg[t]/(ALDgALDgKmFru16BP*(1 + ADPg[t]/ALDgALDgKiADP + AMPg[t]/ALDgALDgKiAMP + ATPg[t]/ALDgALDgKiATP)) + GA3Pg[t]/ALDgALDgKmGA3P + (DHAPg[t]*GA3Pg[t])/(ALDgALDgKmDHAP*ALDgALDgKmGA3P) + (Fru16BPg[t]*GA3Pg[t])/(ALDgALDgKiGA3P*ALDgALDgKmFru16BP*(1 + ADPg[t]/ALDgALDgKiADP + AMPg[t]/ALDgALDgKiAMP + ATPg[t]/ALDgALDgKiATP)))) ATPuc = (ATPucATPuck*ATPc[t])/(cytosol*ADPc[t]) ENOc = (ENOcENOcVmax*(1 - PEPc[t]/(ENOcENOcKeq*PGA2c[t]))*PGA2c[t])/(cytosol*ENOcENOcKmPGA2*(1 + PEPc[t]/ENOcENOcKmPEP + PGA2c[t]/ENOcENOcKmPGA2)) G3PDHg = (G3PDHgG3PDHgVmax*DHAPg[t]*(1 - (Gly3Pg[t]*NADg[t])/(G3PDHgG3PDHgKeq*DHAPg[t]*NADHg[t]))*NADHg[t])/(cytosol*G3PDHgG3PDHgKmDHAP*G3PDHgG3PDHgKmNADH*(1 + DHAPg[t]/G3PDHgG3PDHgKmDHAP + Gly3Pg[t]/G3PDHgG3PDHgKmGly3P)*(1 + NADg[t]/G3PDHgG3PDHgKmNAD + NADHg[t]/G3PDHgG3PDHgKmNADH)) GAPDHg = (GAPDHgGAPDHgVmax*GA3Pg[t]*NADg[t]*(1 - (BPGA13g[t]*NADHg[t])/(GAPDHgGAPDHgKeq*GA3Pg[t]*NADg[t])))/(cytosol*GAPDHgGAPDHgKmGA3P*GAPDHgGAPDHgKmNAD*(1 + BPGA13g[t]/GAPDHgGAPDHgKmBPGA13 + GA3Pg[t]/GAPDHgGAPDHgKmGA3P)*(1 + NADg[t]/GAPDHgGAPDHgKmNAD + NADHg[t]/GAPDHgGAPDHgKmNADH)) GDAg = (-(GDAgGDAgk*DHAPg[t]*Gly3Pc[t]) + GDAgGDAgk*DHAPc[t]*Gly3Pg[t])/cytosol GKg = (GKgGKgVmax*ADPg[t]*Gly3Pg[t]*(1 - (ATPg[t]*Glyg[t])/(GKgGKgKeq*ADPg[t]*Gly3Pg[t])))/(cytosol*GKgGKgKmADP*GKgGKgKmGly3P*(1 + ADPg[t]/GKgGKgKmADP + ATPg[t]/GKgGKgKmATP)*(1 + Gly3Pg[t]/GKgGKgKmGly3P + Glyg[t]/GKgGKgKmGly)) GPOc = (GPOcGPOcVmax*Gly3Pc[t])/(cytosol*GPOcGPOcKmGly3P*(1 + ((1 + SHAM/GPOcGPOcKiSHAM)*Gly3Pc[t])/GPOcGPOcKmGly3P)) GlcTc = (GlcTcGlcTcVmax*(Glce - Glcc[t]))/(cytosol*(Glce + GlcTcGlcTcKmGlc + Glcc[t] + (Glce*GlcTcGlcTcalpha*Glcc[t])/GlcTcGlcTcKmGlc)) GlcTg = (GlcTgGlcTgk*Glcc[t] - GlcTgGlcTgk*Glcg[t])/cytosol GlyTc = (GlyTcGlyTck*(-Glye + Glyc[t]) + (GlyTcGlyTcVrmax*GlyTcGlyTcy*(-Glye + Glyc[t]))/(Glye*GlyTcGlyTcy + GlyTcGlyTcKmGlye*GlyTcGlyTcy + Glyc[t] + (Glye*GlyTcGlyTcx*(1 - GlyTcGlyTcx + GlyTcGlyTcy)*Glyc[t])/(GlyTcGlyTcKmGlye*GlyTcGlyTcy)))/cytosol Glytg = (GlytgGlytgk*(-Glyc[t] + Glyg[t]))/cytosol HXKg = (HXKgHXKgVmax*ATPg[t]*(1 - (ADPg[t]*Glc6Pg[t])/(HXKgHXKgKeq*ATPg[t]*Glcg[t]))*Glcg[t])/(cytosol*HXKgHXKgKmATP*HXKgHXKgKmGlc*(1 + ADPg[t]/HXKgHXKgKmADP + ATPg[t]/HXKgHXKgKmATP)*(1 + Glc6Pg[t]/HXKgHXKgKmGlc6P + Glcg[t]/HXKgHXKgKmGlc)) PFKg = (PFKgPFKgKi1*PFKgPFKgVmax*ATPg[t]*(1 - (ADPg[t]*Fru16BPg[t])/(PFKgPFKgKeq*ATPg[t]*Fru6Pg[t]))*Fru6Pg[t])/(cytosol*PFKgPFKgKmATP*PFKgPFKgKmFru6P*(PFKgPFKgKi1 + Fru16BPg[t])*(PFKgPFKgKsATP/PFKgPFKgKmATP + ADPg[t]/PFKgPFKgKmADP + ATPg[t]/PFKgPFKgKmATP + (ADPg[t]*Fru16BPg[t])/(PFKgPFKgKi2*PFKgPFKgKmADP) + Fru6Pg[t]/PFKgPFKgKmFru6P + (ATPg[t]*Fru6Pg[t])/(PFKgPFKgKmATP*PFKgPFKgKmFru6P))) PGA3Tg = (-(PGA3TgPGA3Tgk*PGA3c[t]) + PGA3TgPGA3Tgk*PGA3g[t])/cytosol PGAMc = (PGAMcPGAMcVmax*(1 - PGA2c[t]/(PGAMcPGAMcKeq*PGA3c[t]))*PGA3c[t])/(cytosol*PGAMcPGAMcKmPGA3*(1 + PGA2c[t]/PGAMcPGAMcKmPGA2 + PGA3c[t]/PGAMcPGAMcKmPGA3)) PGIg = (PGIgPGIgVmax*(1 - Fru6Pg[t]/(PGIgPGIgKeq*Glc6Pg[t]))*Glc6Pg[t])/(cytosol*PGIgPGIgKmGlc6P*(1 + Fru6Pg[t]/PGIgPGIgKmFru6P + Glc6Pg[t]/PGIgPGIgKmGlc6P)) PGKg = (PGKgPGKgVmax*ADPg[t]*BPGA13g[t]*(1 - (ATPg[t]*PGA3g[t])/(PGKgPGKgKeq*ADPg[t]*BPGA13g[t])))/(cytosol*PGKgPGKgKmADP*PGKgPGKgKmBPGA13*(1 + ADPg[t]/PGKgPGKgKmADP + ATPg[t]/PGKgPGKgKmATP)*(1 + BPGA13g[t]/PGKgPGKgKmBPGA13 + PGA3g[t]/PGKgPGKgKmPGA3)) PYKc = (PYKcPYKcVmax*ADPc[t]*(PEPc[t]/(PYKcPYKcKmPEP*(1 + ADPc[t]/PYKcPYKcKiADP + ATPc[t]/PYKcPYKcKiATP)))^PYKcPYKcn*(1 - (ATPc[t]*Pyrc[t])/(PYKcPYKcKeq*ADPc[t]*PEPc[t])))/(cytosol*PYKcPYKcKmADP*(1 + ADPc[t]/PYKcPYKcKmADP + ATPc[t]/PYKcPYKcKmATP)*(1 + (PEPc[t]/(PYKcPYKcKmPEP*(1 + ADPc[t]/PYKcPYKcKiADP + ATPc[t]/PYKcPYKcKiATP)))^PYKcPYKcn + Pyrc[t]/PYKcPYKcKmPyr)) PyrTc = (PyrTcPyrTcVmax*Pyrc[t])/(cytosol*PyrTcPyrTcKmPyr*(1 + Pyrc[t]/PyrTcPyrTcKmPyr)) TPIg = (TPIgTPIgVmax*DHAPg[t]*(1 - GA3Pg[t]/(TPIgTPIgKeq*DHAPg[t])))/(cytosol*TPIgTPIgKmDHAP*(1 + DHAPg[t]/TPIgTPIgKmDHAP + GA3Pg[t]/TPIgTPIgKmGA3P)) end rate equations begin parameters AKcAKck1 = 442.0 AKcAKck2 = 1000.0 AKgAKgk1 = 442.0 AKgAKgk2 = 1000.0 ALDgALDgKeq = 0.084 ALDgALDgKiADP = 1.51 ALDgALDgKiAMP = 3.65 ALDgALDgKiATP = 0.68 ALDgALDgKiGA3P = 0.098 ALDgALDgKmDHAP = 0.015 ALDgALDgKmFru16BP = 0.009 ALDgALDgKmGA3P = 0.067 ALDgALDgVmax = 560.0 ATPucATPuck = 50.0 ENOcENOcKeq = 4.12 ENOcENOcKmPEP = 0.24 ENOcENOcKmPGA2 = 0.054 ENOcENOcVmax = 598.0 EXTERNAL = 0.0 G3PDHgG3PDHgKeq = 17085.0 G3PDHgG3PDHgKmDHAP = 0.1 G3PDHgG3PDHgKmGly3P = 2.0 G3PDHgG3PDHgKmNAD = 0.4 G3PDHgG3PDHgKmNADH = 0.01 G3PDHgG3PDHgVmax = 465.0 GAPDHgGAPDHgKeq = 0.066 GAPDHgGAPDHgKmBPGA13 = 0.1 GAPDHgGAPDHgKmGA3P = 0.15 GAPDHgGAPDHgKmNAD = 0.45 GAPDHgGAPDHgKmNADH = 0.02 GAPDHgGAPDHgVmax = 720.9 GDAgGDAgk = 600.0 GKgGKgKeq = 0.000837 GKgGKgKmADP = 0.56 GKgGKgKmATP = 0.24 GKgGKgKmGly = 0.44 GKgGKgKmGly3P = 3.83 GKgGKgVmax = 200.0 GPOcGPOcKiSHAM = 0.021 GPOcGPOcKmGly3P = 1.7 GPOcGPOcVmax = 368.0 GlcTcGlcTcKmGlc = 1.1 GlcTcGlcTcVmax = 111.7 GlcTcGlcTcalpha = 0.75 GlcTgGlcTgk = 250000.0 GlyTcGlyTcKmGlye = 0.17 GlyTcGlyTcVrmax = 85.0 GlyTcGlyTck = 8.5 GlyTcGlyTcx = 1.0 GlyTcGlyTcy = 1.0 GlytgGlytgk = 1000.0 HXKgHXKgKeq = 759.0 HXKgHXKgKmADP = 0.126 HXKgHXKgKmATP = 0.116 HXKgHXKgKmGlc = 0.1 HXKgHXKgKmGlc6P = 12.0 HXKgHXKgVmax = 1929.0 O2c = 1.0 PFKgPFKgKeq = 1035.0 PFKgPFKgKi1 = 15.8 PFKgPFKgKi2 = 10.7 PFKgPFKgKmADP = 1.0 PFKgPFKgKmATP = 0.0648 PFKgPFKgKmFru6P = 0.999 PFKgPFKgKsATP = 0.0393 PFKgPFKgVmax = 1708.0 PGA3TgPGA3Tgk = 250.0 PGAMcPGAMcKeq = 0.17 PGAMcPGAMcKmPGA2 = 0.16 PGAMcPGAMcKmPGA3 = 0.15 PGAMcPGAMcVmax = 225.0 PGIgPGIgKeq = 0.46 PGIgPGIgKmFru6P = 0.12 PGIgPGIgKmGlc6P = 0.4 PGIgPGIgVmax = 1305.0 PGKgPGKgKeq = 3376.0 PGKgPGKgKmADP = 0.1 PGKgPGKgKmATP = 0.29 PGKgPGKgKmBPGA13 = 0.003 PGKgPGKgKmPGA3 = 1.62 PGKgPGKgVmax = 2862.0 PYKcPYKcKeq = 10800.0 PYKcPYKcKiADP = 0.64 PYKcPYKcKiATP = 0.57 PYKcPYKcKmADP = 0.114 PYKcPYKcKmATP = 15.0 PYKcPYKcKmPEP = 0.34 PYKcPYKcKmPyr = 50.0 PYKcPYKcVmax = 1020.0 PYKcPYKcn = 2.5 PyrTcPyrTcKmPyr = 1.96 PyrTcPyrTcVmax = 230.0 SHAM = 0.0 TPIgTPIgKeq = 0.046 TPIgTPIgKmDHAP = 1.2 TPIgTPIgKmGA3P = 0.25 TPIgTPIgVmax = 999.3 cytosol = 5.4549 default = 1.0 glycosome = 0.2451 Glce = 5.0 Glye = "1e-06" Pig = 0.0 Pyre = 0.0 defaultcompartment = 1.0 end parameters begin initial conditions ADPc[0] = ADPci ADPg[0] = ADPgi AMPc[0] = AMPci AMPg[0] = AMPgi ATPc[0] = ATPci ATPg[0] = ATPgi BPGA13g[0] = BPGA13gi DHAPc[0] = DHAPci DHAPg[0] = DHAPgi Fru16BPg[0] = Fru16BPgi Fru6Pg[0] = Fru6Pgi GA3Pg[0] = GA3Pgi Glc6Pg[0] = Glc6Pgi Glcc[0] = Glcci Glcg[0] = Glcgi Gly3Pc[0] = Gly3Pci Gly3Pg[0] = Gly3Pgi Glyc[0] = Glyci Glyg[0] = Glygi NADHg[0] = NADHgi NADg[0] = NADgi PEPc[0] = PEPci PGA2c[0] = PGA2ci PGA3c[0] = PGA3ci PGA3g[0] = PGA3gi Pyrc[0] = Pyrci end initial conditions begin initial values ADPci = 1.0 ADPgi = 1.0 AMPci = 0.1 AMPgi = 0.1 ATPci = 4.9 ATPgi = 4.9 BPGA13gi = 0.4 DHAPci = 4.6 DHAPgi = 4.6 Fru16BPgi = 13.0 Fru6Pgi = 0.2 GA3Pgi = 0.14 Glc6Pgi = 0.8 Glcci = 0.01 Glcgi = 0.01 Gly3Pci = 1.5 Gly3Pgi = 1.5 Glyci = 1e-06 Glygi = 1e-06 NADHgi = 0.1 NADgi = 3.9 PEPci = 1.4 PGA2ci = 0.5 PGA3ci = 17.0 PGA3gi = 17.0 Pyrci = 14.0 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events end events begin process annotations AKc http://identifiers.org/interpro/IPR000850 end process annotations begin species annotations ADPc http://identifiers.org/kegg.compound/C00008 ADPg http://identifiers.org/kegg.compound/C00008 AMPc http://identifiers.org/kegg.compound/C00020 AMPg http://identifiers.org/kegg.compound/C00020 ATPc http://identifiers.org/kegg.compound/C00002 ATPg http://identifiers.org/kegg.compound/C00002 BPGA13g http://identifiers.org/kegg.compound/C00236 DHAPc http://identifiers.org/kegg.compound/C00111 DHAPg http://identifiers.org/kegg.compound/C00111 Fru16BPg http://identifiers.org/kegg.compound/C00354 Fru6Pg http://identifiers.org/kegg.compound/C00085 GA3Pg http://identifiers.org/cas/142-10-9 Glc6Pg http://identifiers.org/kegg.compound/C00092 Glcc http://identifiers.org/kegg.compound/C00293 Glce http://identifiers.org/kegg.compound/C00293 Glcg http://identifiers.org/kegg.compound/C00293 Gly3Pc http://identifiers.org/kegg.compound/C00093 Gly3Pg http://identifiers.org/kegg.compound/C00093 Glyc http://identifiers.org/kegg.compound/C00116 Glye http://identifiers.org/kegg.compound/C00116 Glyg http://identifiers.org/kegg.compound/C00116 NADHg http://identifiers.org/kegg.compound/C00004 NADg http://identifiers.org/kegg.compound/C00003 PEPc http://identifiers.org/kegg.compound/C00074 PGA2c http://identifiers.org/obo.chebi/CHEBI%3A24344 PGA3c http://identifiers.org/kegg.compound/C00197 PGA3g http://identifiers.org/kegg.compound/C00197 Pig http://identifiers.org/obo.chebi/CHEBI%3A24838 Pyrc http://identifiers.org/kegg.compound/C00022 Pyre http://identifiers.org/kegg.compound/C00022 end species annotations begin units end units