figueiredo6

vENOf

PG2 = PEP

vENOr

PEP = PG2

vG2K

Gly = PG2

vGAD

DGAT = KDG

vGAOR

GA = Gly

vGAPDH

BPG = GAP

vGAPN

GAP = PG3

vGDH

Glci = DGAT

vGlcUp

∅ = Glci

vIPGAMf

PG3 = PG2

vIPGAMr

PG2 = PG3

vKDGKi

KDG = KDPG

vKDPGA1f

KDG = Pyr + GA

vKDPGA1r

Pyr + GA = KDG

vKDPGA2f

KDPG = Pyr + GAP

vKDPGA2r

Pyr + GAP = KDPG

vPEPS

Pyr = PEP

vPGK

PG3 = BPG

vPK

PEP = Pyr

vdegBPG

BPG = ∅

vdegGAP

GAP = ∅

vdegPEP

PEP = ∅

vsinkGAP

GAP = ∅

vsinkPyr

Pyr = ∅

Global parameters

Assignment rules

VmGAvKDPGA1 = VmGAvKDPGA180 * volFactor

VmGAvGAOR = VmGAvGAOR80 * volFactor

VmKDGvKDPGA1 = VmKDGvKDPGA180 * volFactor

KdegBPG = KdegBPG80

VmPyrvKDPGA1 = VmPyrvKDPGA180 * volFactor

VmKDPGvKDPGA2 = VmKDPGvKDPGA280 * volFactor

VmGlcUp = VmGlcUp80 * volFactor

VmGlyvG2K = VmGlyvG2K80 * volFactor

VmKDGvKDGKi = VmKDGvKDGKi80 * volFactor

VmPG3vIPGAMc = VmPG3vIPGAMc80 * volFactor

VmPyrvPEPS = VmPyrvPEPS80 * volFactor

VmGAPvKDPGA2 = VmGAPvKDPGA280 * volFactor

VmPEPvENOa = VmPEPvENOa80 * volFactor

KdegGAP = KdegGAP80

VmPG3vPGK = VmPG3vPGK80 * volFactor

VmPEPvPK = VmPEPvPK80 * volFactor

VmPyrvKDPGA2 = VmPyrvKDPGA280 * volFactor

VmBPGvPGK = VmBPGvPGK80 * volFactor

KdegPEP = KdegPEP80

VmDGatvGAD = VmDGatvGAD80 * volFactor

VmGAPvGAPDH = VmGAPvGAPDH80 * volFactor

VmGlcvGDH = VmGlcvGDH80 * volFactor

VmPG2vIPGAMa = VmPG2vIPGAMa80 * volFactor

VmGAPvGAPN = VmGAPvGAPN80 * volFactor

Glci0 = KmGlcvGDH * VmGlcUp / (-VmGlcUp + VmGlcvGDH)

VmBPGvGAPDH = VmBPGvGAPDH80 * volFactor

VmPG2vENOc = VmPG2vENOc80 * volFactor

Function definitions

Note that constraints are not enforced in simulations. It remains the responsibility of the user to verify that simulation results satisfy these constraints.


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