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Unit definitions 0

Unit definitions have no effect on the numerical analysis of the model. It remains the responsibility of the modeler to ensure the internal numerical consistency of the model. If units are provided, however, the consistency of the model units will be checked.

Name Definition

Compartments 1

Id Name Spatial dimensions Size
default_compartment — 3.0 1.0

Species 8

Id Name Initial quantity Compartment Fixed
am — 1.0 default_compartment ✘
bm — 1.0 default_compartment ✘
p1 — 1.0 default_compartment ✔
p2 — 1.0 default_compartment ✔
s — 5.0 default_compartment ✔
x1 — 1.0 default_compartment ✘
x2 — 1.0 default_compartment ✘
x3 — 1.0 default_compartment ✘

Initial assignments 0

Initial assignments are expressions that are evaluated at time=0. It is not recommended to create initial assignments for all model entities. Restrict the use of initial assignments to cases where a value is expressed in terms of values or sizes of other model entities. Note that it is not permitted to have both an initial assignment and an assignment rule for a single model entity.

Definition
Reactions 5
Id Name Objective coefficient Reaction Equation and Kinetic Law Flux bounds
v_1 v_1 am + s = bm + x1

am * s * V1 * (1 - bm * x1 / (am * Keq * s)) / ((1 + am / K + bm / K) * K^2 * (1 + s / K + x1 / K) * (1 + x2^5 / K^5 + x3^5 / K^5))
v_2 — x1 = x3

(V2*x1*(1 - x3/(Keq*x1)))/(K*(1 + x1/K + x3/K))
v_3 — x1 = x2

(V3*x1*(1 - x2/(Keq*x1)))/(K*(1 + x1/K + x2/K))
v_4 — x2 + bm = p1 + am

(bm*V4*(1 - (am*p)/(bm*Keq*x2))*x2)/((1 + am/K + bm/K)*K^2*(1 + p/K + x2/K))
v_5 — x3 + bm = p2 + am

(bm*V5*(1 - (am*p)/(bm*Keq*x3))*x3)/((1 + am/K + bm/K)*K^2*(1 + p/K + x3/K))

Parameters 0   8

Global parameters

Id Value
K 1.0
Keq 100.0
V1 10.0
V2 1.0
V3 1.0
V4 1.0
V5 2.0
p 1.0

Local parameters

Id Value Reaction

Rules 0   0   0

Assignment rules

Definition

Rate rules

Definition

Algebraic rules

Definition

Events 0

Trigger Assignments