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valero2006_Fig1AandB

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A kinetic study of a ternary cycle between adenine nucleotides.

  • Edelmira Valero
  • Ramón Varón
  • Francisco García-Carmona
FEBS J. 2006; 273 (15): 3598-3613
Abstract
In the present paper, a kinetic study is made of the behavior of a moiety-conserved ternary cycle between the adenine nucleotides. The system contains the enzymes S-acetyl coenzyme A synthetase, adenylate kinase and pyruvate kinase, and converts ATP into AMP, then into ADP and finally back to ATP. L-Lactate dehydrogenase is added to the system to enable continuous monitoring of the progress of the reaction. The cycle cannot work when the only recycling substrate in the reaction medium is AMP. A mathematical model is proposed whose kinetic behavior has been analyzed both numerically by integration of the nonlinear differential equations describing the kinetics of the reactions involved, and analytically under steady-state conditions, with good agreement with the experimental results being obtained. The data obtained showed that there is a threshold value of the S-acetyl coenzyme A synthetase/adenylate kinase ratio, above which the cycle stops because all the recycling substrate has been accumulated as AMP, never reaching the steady state. In addition, the concept of adenylate energy charge has been applied to the system, obtaining the enabled values of the rate constants for a fixed adenylate energy charge value and vice versa.
Id Name JWS model
model0_valero valero valero
model1_valero valero valero
Id Name Source Number of Data Sources
Id Name Model Simulation Simulation Simulation
task0_model0_valero valero 0.0 600.0 1000
task1_model1_valero valero 0.0 600.0 1000

2D Plots

Id Name Number of Curves
Figure1A Figure 1A: ADP, AMP and ATP 0
Figure1ANADH Figure 1A: NADH 0
Figure1B Figure 1B: ADP, AMP and ATP 0
Figure1BNADH Figure 1B: NADH 0

CSV Reports

Id Name Number of Columns