schaber2006_Fig4

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Model Manuscripts

A modelling approach to quantify dynamic crosstalk between the pheromone and the starvation pathway in baker's yeast.

  • Jörg Schaber
  • Bente Kofahl
  • Axel Kowald
  • Edda Klipp
FEBS J. 2006; 273 (15): 3520-3533
Abstract
Cells must be able to process multiple information in parallel and, moreover, they must also be able to combine this information in order to trigger the appropriate response. This is achieved by wiring signalling pathways such that they can interact with each other, a phenomenon often called crosstalk. In this study, we employ mathematical modelling techniques to analyse dynamic mechanisms and measures of crosstalk. We present a dynamic mathematical model that compiles current knowledge about the wiring of the pheromone pathway and the filamentous growth pathway in yeast. We consider the main dynamic features and the interconnections between the two pathways in order to study dynamic crosstalk between these two pathways in haploid cells. We introduce two new measures of dynamic crosstalk, the intrinsic specificity and the extrinsic specificity. These two measures incorporate the combined signal of several stimuli being present simultaneously and seem to be more stable than previous measures. When both pathways are responsive and stimulated, the model predicts that (a) the filamentous growth pathway amplifies the response of the pheromone pathway, and (b) the pheromone pathway inhibits the response of filamentous growth pathway in terms of mitogen activated protein kinase activity and transcriptional activity, respectively. Among several mechanisms we identified leakage of activated Ste11 as the most influential source of crosstalk. Moreover, we propose new experiments and predict their outcomes in order to test hypotheses about the mechanisms of crosstalk between the two pathways. Studying signals that are transmitted in parallel gives us new insights about how pathways and signals interact in a dynamical way, e.g., whether they amplify, inhibit, delay or accelerate each other.
Id Name JWS model
model0_schaber1 schaber1 schaber1
model1_schaber1 schaber1 schaber1
model2_schaber1 schaber1 schaber1
Id Name Source Number of Data Sources
Id Name Model Simulation Simulation Simulation
task0_model0_schaber1 schaber1 0.0 600.0 1000
task1_model1_schaber1 schaber1 0.0 600.0 1000
task2_model2_schaber1 schaber1 0.0 600.0 1000

2D Plots

Id Name Number of Curves
Figure_4_Alpha Figure 4 Alpha 1
Figure_4_Beta Figure 4 Beta 1
Figure_4_Fus3PP Figure 4 Fus3PP 3
Figure_4_Kss1PP Figure 4 Kss1PP 3
Figure_4_PREP Figure 4 PREP 3
Figure_4_FREP Figure 4 FREP 3

CSV Reports

Id Name Number of Columns