bier2000_Fig3

1

3

Model Manuscripts

How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment.

  • M Bier
  • Barbara M Bakker
  • Hans V Westerhoff
Biophys. J. 2000; 78 (3): 1087-1093
Abstract
Of all the lifeforms that obtain their energy from glycolysis, yeast cells are among the most basic. Under certain conditions the concentrations of the glycolytic intermediates in yeast cells can oscillate. Individual yeast cells in a suspension can synchronize their oscillations to get in phase with each other. Although the glycolytic oscillations originate in the upper part of the glycolytic chain, the signaling agent in this synchronization appears to be acetaldehyde, a membrane-permeating metabolite at the bottom of the anaerobic part of the glycolytic chain. Here we address the issue of how a metabolite remote from the pacemaking origin of the oscillation may nevertheless control the synchronization. We present a quantitative model for glycolytic oscillations and their synchronization in terms of chemical kinetics. We show that, in essence, the common acetaldehyde concentration can be modeled as a small perturbation on the "pacemaker" whose effect on the period of the oscillations of cells in the same suspension is indeed such that a synchronization develops.
Id Name JWS model
model0_bier2 bier2 bier2
Id Name Source Number of Data Sources
Id Name Model Simulation Simulation Simulation
task0_model0_bier2 bier2 0.0 1000.0 1000

2D Plots

Id Name Number of Curves
Figure_3_T2_sum_T1 Figure 3 T2 + T1 1
Figure_3_T2_dif_T1 Figure 3 T2 - T1 1
Figure_3_T1_and_T2 Figure 3 T1 and T2 2

CSV Reports

Id Name Number of Columns