bhartiya2003_Fig3

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Model Manuscripts

Dynamic model of Escherichia coli tryptophan operon shows an optimal structural design.

  • Sharad Bhartiya
  • Subodh Rawool
  • KV Venkatesh
Eur. J. Biochem. 2003; 270 (12): 2644-2651
Abstract
A mathematical model has been developed to study the effect of external tryptophan on the trp operon. The model accounts for the effect of feedback repression by tryptophan through the Hill equation. We demonstrate that the trp operon maintains an intracellular steady-state concentration in a fivefold range irrespective of extracellular conditions. Dynamic behavior of the trp operon corresponding to varying levels of extracellular tryptophan illustrates the adaptive nature of regulation. Depending on the external tryptophan level in the medium, the transient response ranges from a rapid and underdamped to a sluggish and highly overdamped response. To test model fidelity, simulation results are compared with experimental data available in the literature. We further demonstrate the significance of the biological structure of the operon on the overall performance. Our analysis suggests that the tryptophan operon has evolved to a truly optimal design.
Id Name JWS model
model0_bhartiya1 bhartiya1 bhartiya1
model1_bhartiya1 bhartiya1 bhartiya1
model2_bhartiya1 bhartiya1 bhartiya1
Id Name Source Number of Data Sources
Id Name Model Simulation Simulation Simulation
task0_model0_bhartiya1 bhartiya1 0.0 250.0 1000
task1_model1_bhartiya1 bhartiya1 0.0 250.0 1000
task2_model2_bhartiya1 bhartiya1 0.0 250.0 1000

2D Plots

Id Name Number of Curves
Figure_3A Figure 3A 3
Figure_3B Figure 3B 3
Figure_3C Figure 3C 3
Figure_3D Figure 3D 1

CSV Reports

Id Name Number of Columns