balaggade2008_Fig2

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Model Manuscripts

A synthetic Escherichia coli predator-prey ecosystem.

  • Frederick K Balagaddé
  • Hao Song
  • Jun Ozaki
  • Cynthia H Collins
  • Matthew Barnet
  • Frances H Arnold
  • Stephen R Quake
  • Lingchong You
Mol. Syst. Biol. 2008; 4 : 187
Abstract
We have constructed a synthetic ecosystem consisting of two Escherichia coli populations, which communicate bi-directionally through quorum sensing and regulate each other's gene expression and survival via engineered gene circuits. Our synthetic ecosystem resembles canonical predator-prey systems in terms of logic and dynamics. The predator cells kill the prey by inducing expression of a killer protein in the prey, while the prey rescue the predators by eliciting expression of an antidote protein in the predator. Extinction, coexistence and oscillatory dynamics of the predator and prey populations are possible depending on the operating conditions as experimentally validated by long-term culturing of the system in microchemostats. A simple mathematical model is developed to capture these system dynamics. Coherent interplay between experiments and mathematical analysis enables exploration of the dynamics of interacting populations in a predictable manner.
Id Name JWS model
model0_balagadde1 balaggade1 balaggade1
model1_balagadde1 balaggade1 balaggade1
model2_balagadde1 balaggade1 balaggade1
Id Name Source Number of Data Sources
Id Name Model Simulation Simulation Simulation
task0_model0_balagadde1 balaggade1 0.0 300.0 1000
task2_model2_balagadde1 balaggade1 0.0 300.0 1000
task1_model1_balagadde1 balaggade1 0.0 300.0 1000

2D Plots

Id Name Number of Curves
Figure_2_5uM_IPTG Figure 2 5uM IPTG 2
Figure_2_0uM_IPTG Figure 2 0uM IPTG 2
Figure_2_1000uM_IPTG Figure 2 1000uM IPTG 2

CSV Reports

Id Name Number of Columns