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This is a derivative of the model dupreez2-user
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A short identifier for use in URLs and software representations.
Name
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Human-friendly model name.
Notes
You have to declare units in the
Unit definitions
section before they can be selected here.
Substance units
---------
min
mmol
L
mM
This should be units of amount (not concentration). Units of concentration are derived from substance units and the size units of compartments, unless a species is marked as having only substance units.
Time units
---------
min
mmol
L
mM
Volume units
---------
min
mmol
L
mM
These units will be assigned to compartments with 3 spatial dimensions.
Extent units
---------
min
mmol
L
mM
This should be units of amount or concentration (not per time). The final units are obtained by dividing by the time units specified for the model.
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Area units
---------
min
mmol
L
mM
These units will be assigned to compartments with 2 spatial dimensions.
Length units
---------
min
mmol
L
mM
These units will be assigned to compartments with 1 spatial dimension.
SBO term
---------
+-- occurring entity representation
+--+-- relationship
+--+--+-- equivalence
+--+--+-- logical relationship
+--+--+-- positional relationship
+--+--+--+-- cis
+--+--+--+-- trans
+--+--+--+-- containment
+--+--+-- control
+--+--+--+-- inhibition
+--+--+--+--+-- absolute inhibition
+--+--+--+-- stimulation
+--+--+--+--+-- necessary stimulation
+--+--+--+--+-- catalysis
+--+--+--+--+-- absolute stimulation
+--+--+--+-- allosteric control
+--+--+--+-- production
+--+--+--+-- consumption
+--+--+-- logical combination
+--+--+--+-- not
+--+--+--+-- and
+--+--+--+-- or
+--+--+--+-- xor
+--+-- process
+--+--+-- encapsulating process
+--+--+-- uncertain process
+--+--+-- omitted process
+--+--+-- state variable assignment
+--+--+--+-- petri net transition
+--+--+-- biochemical or transport reaction
+--+--+--+-- biochemical reaction
+--+--+--+--+-- non-covalent binding
+--+--+--+--+-- degradation
+--+--+--+--+-- dissociation
+--+--+--+--+-- conformational transition
+--+--+--+--+-- conversion
+--+--+--+--+--+-- addition of a chemical group
+--+--+--+--+--+--+-- methylation
+--+--+--+--+--+--+-- acetylation
+--+--+--+--+--+--+-- phosphorylation
+--+--+--+--+--+--+-- glycosylation
+--+--+--+--+--+--+-- palmitoylation
+--+--+--+--+--+--+-- myristoylation
+--+--+--+--+--+--+-- sulfation
+--+--+--+--+--+--+-- prenylation
+--+--+--+--+--+--+--+-- farnesylation
+--+--+--+--+--+--+--+-- geranylgeranylation
+--+--+--+--+--+--+-- ubiquitination
+--+--+--+--+--+--+-- hydroxylation
+--+--+--+--+--+-- removal of a chemical group
+--+--+--+--+--+--+-- dephosphorylation
+--+--+--+--+--+--+-- decarboxylation
+--+--+--+--+--+--+-- decarbonylation
+--+--+--+--+--+--+-- deamination
+--+--+--+--+--+-- transfer of a chemical group
+--+--+--+--+--+--+-- transamination
+--+--+--+--+--+-- cleavage
+--+--+--+--+-- redox reaction
+--+--+--+--+--+-- oxidation
+--+--+--+--+--+-- reduction
+--+--+--+--+-- acid-base reaction
+--+--+--+--+--+-- protonation
+--+--+--+--+--+-- deprotonation
+--+--+--+--+-- ionisation
+--+--+--+--+-- hydrolysis
+--+--+--+--+-- isomerisation
+--+--+--+-- transport reaction
+--+--+--+--+-- transcellular membrane influx reaction
+--+--+--+--+-- transcellular membrane efflux reaction
+--+--+-- composite biochemical process
+--+--+--+-- genetic production
+--+--+--+-- transcription
+--+--+--+-- translation
+--+--+--+-- dna replication
+--+--+-- molecular or genetic interaction
+--+--+--+-- genetic interaction
+--+--+--+--+-- genetic suppression
+--+--+--+--+-- genetic enhancement
+--+--+--+--+-- synthetic lethality
+--+--+--+-- molecular interaction
+--+--+--+--+-- protein complex formation
+--+--+-- biological effect of a perturbation
+--+--+-- phenotype
+--+-- biological activity