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Info!
This is a derivative of the model beuke23-user-118
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Id
*
A short identifier for use in URLs and software representations.
Name
*
Human-friendly model name.
Notes
You have to declare units in the
Unit definitions
section before they can be selected here.
Substance units
---------
volume
substance
This should be units of amount (not concentration). Units of concentration are derived from substance units and the size units of compartments, unless a species is marked as having only substance units.
Time units
---------
volume
substance
Volume units
---------
volume
substance
These units will be assigned to compartments with 3 spatial dimensions.
Extent units
---------
volume
substance
This should be units of amount or concentration (not per time). The final units are obtained by dividing by the time units specified for the model.
Advanced
Area units
---------
volume
substance
These units will be assigned to compartments with 2 spatial dimensions.
Length units
---------
volume
substance
These units will be assigned to compartments with 1 spatial dimension.
SBO term
---------
+-- occurring entity representation
+--+-- relationship
+--+--+-- equivalence
+--+--+-- logical relationship
+--+--+-- positional relationship
+--+--+--+-- cis
+--+--+--+-- trans
+--+--+--+-- containment
+--+--+-- control
+--+--+--+-- inhibition
+--+--+--+--+-- absolute inhibition
+--+--+--+-- stimulation
+--+--+--+--+-- necessary stimulation
+--+--+--+--+-- catalysis
+--+--+--+--+-- absolute stimulation
+--+--+--+-- allosteric control
+--+--+--+-- production
+--+--+--+-- consumption
+--+--+-- logical combination
+--+--+--+-- not
+--+--+--+-- and
+--+--+--+-- or
+--+--+--+-- xor
+--+-- process
+--+--+-- encapsulating process
+--+--+-- uncertain process
+--+--+-- omitted process
+--+--+-- state variable assignment
+--+--+--+-- petri net transition
+--+--+-- biochemical or transport reaction
+--+--+--+-- biochemical reaction
+--+--+--+--+-- non-covalent binding
+--+--+--+--+-- degradation
+--+--+--+--+-- dissociation
+--+--+--+--+-- conformational transition
+--+--+--+--+-- conversion
+--+--+--+--+--+-- addition of a chemical group
+--+--+--+--+--+--+-- methylation
+--+--+--+--+--+--+-- acetylation
+--+--+--+--+--+--+-- phosphorylation
+--+--+--+--+--+--+-- glycosylation
+--+--+--+--+--+--+-- palmitoylation
+--+--+--+--+--+--+-- myristoylation
+--+--+--+--+--+--+-- sulfation
+--+--+--+--+--+--+-- prenylation
+--+--+--+--+--+--+--+-- farnesylation
+--+--+--+--+--+--+--+-- geranylgeranylation
+--+--+--+--+--+--+-- ubiquitination
+--+--+--+--+--+--+-- hydroxylation
+--+--+--+--+--+-- removal of a chemical group
+--+--+--+--+--+--+-- dephosphorylation
+--+--+--+--+--+--+-- decarboxylation
+--+--+--+--+--+--+-- decarbonylation
+--+--+--+--+--+--+-- deamination
+--+--+--+--+--+-- transfer of a chemical group
+--+--+--+--+--+--+-- transamination
+--+--+--+--+--+-- cleavage
+--+--+--+--+-- redox reaction
+--+--+--+--+--+-- oxidation
+--+--+--+--+--+-- reduction
+--+--+--+--+-- acid-base reaction
+--+--+--+--+--+-- protonation
+--+--+--+--+--+-- deprotonation
+--+--+--+--+-- ionisation
+--+--+--+--+-- hydrolysis
+--+--+--+--+-- isomerisation
+--+--+--+-- transport reaction
+--+--+--+--+-- transcellular membrane influx reaction
+--+--+--+--+-- transcellular membrane efflux reaction
+--+--+-- composite biochemical process
+--+--+--+-- genetic production
+--+--+--+-- transcription
+--+--+--+-- translation
+--+--+--+-- dna replication
+--+--+-- molecular or genetic interaction
+--+--+--+-- genetic interaction
+--+--+--+--+-- genetic suppression
+--+--+--+--+-- genetic enhancement
+--+--+--+--+-- synthetic lethality
+--+--+--+-- molecular interaction
+--+--+--+--+-- protein complex formation
+--+--+-- biological effect of a perturbation
+--+--+-- phenotype
+--+-- biological activity